KEGG   Sardina pilchardus (sardine): 134078056
Entry
134078056         CDS       T10667                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03030  DNA replication
spil03410  Base excision repair
spil03420  Nucleotide excision repair
spil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    134078056 (rfc2)
   03410 Base excision repair
    134078056 (rfc2)
   03420 Nucleotide excision repair
    134078056 (rfc2)
   03430 Mismatch repair
    134078056 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spil03032]
    134078056 (rfc2)
   03036 Chromosome and associated proteins [BR:spil03036]
    134078056 (rfc2)
   03400 DNA repair and recombination proteins [BR:spil03400]
    134078056 (rfc2)
DNA replication proteins [BR:spil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    134078056 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    134078056 (rfc2)
Chromosome and associated proteins [BR:spil03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    134078056 (rfc2)
DNA repair and recombination proteins [BR:spil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     134078056 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    134078056 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 AAA_22 nSTAND_NTPase5 RCF1-5-like_lid AAA_14 AAA_16 Mg_chelatase Viral_helicase1 Rad17 AAA_11 RuvB_N AAA_19 AAA_assoc_2 AAA_18 MipZ nSTAND3 AAA_24 ABC_tran MeaB AAA_28 AMP-binding_C_3 AAA_25 FtsK_SpoIIIE DNAX_ATPase_lid AAA_5 SLFN-g3_helicase ATPase_2 RNA_helicase NTPase_1 AAA_30 T2SSE bpMoxR MCM DUF815 AAA_23
Other DBs
NCBI-GeneID: 134078056
NCBI-ProteinID: XP_062389663
LinkDB
Position
4:complement(1058618..1092284)
AA seq 350 aa
MDVERNDHVRTEMDVDITTNKREVVSKGTADAYELPWVEKYRPLKLEEIVGNEETINRLE
VFARQGNVPNIIIAGPPGTGKTTSILCLARSLLGSAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYTKLRDDQIMMRLMEVVEKERLTVTNDGLEAIIFTAQGDMRQALNNLQSTNS
GFGFINSENVFKVCDEPHPLLVKSMLEHCVNANIDDAYKIIEQLWSLGYSPEDIIGNIFR
VCKTFPMPEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLGRLCCKTTVP
NT seq 1053 nt   +upstreamnt  +downstreamnt
atggatgtcgaaagaaatgaccatgttagaacagaaatggacgtggacataacaacaaac
aagcgcgaagtcgtgtccaaaggaacggcagatgcatatgaattgccatgggtagagaaa
taccgacccctaaaattggaagagattgtggggaatgaagaaactattaacagactagag
gtttttgccagacaaggcaatgttccaaacattattattgccgggcctcctggtactgga
aaaacaaccagcattttgtgcttggccagatctctgttgggctctgctatgaaggatgcc
gtgcttgagctgaatgcatcaaatgatcgaggtattgatgtggtgagaaacaagatcaag
atgtttgctcaacagaaggtaactctacccaaaggacgtcacaaaattatcatcctggat
gaagcagacagcatgactgatggagctcagcaagcactgaggcgcaccatggagatctat
tccaaaacgacacgcttcgctctggcctgcaatgcatcagacaagattatagagccaatt
cagtcacgttgtgcagtgcttcgctacacaaagctacgggatgaccagatcatgatgcgt
ttgatggaggtggtggagaaggaaagacttactgtcaccaatgatggtttggaggcaatc
atcttcacagcacaaggagatatgagacaggcacttaacaatctccagtcaacaaattca
ggatttggttttatcaacagtgaaaatgttttcaaggtctgtgatgagccccaccctcta
cttgttaaaagtatgctggagcattgtgttaatgcaaatattgatgacgcttataagatc
atagagcagctttggtctcttggttactctccagaagacattatcggaaatatcttcaga
gtgtgtaagacctttccgatgccagagtatctgaaattggaattcataaaggagattggt
tacactcacatgaaggtggcagagggagtaaattcactgctgcagatggctggactattg
ggaagactctgttgtaagacaactgtgccataa

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