Sardina pilchardus (sardine): 134078255
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Entry
134078255 CDS
T10667
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134078255 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134078255 (prpf40a)
Spliceosome [BR:
spil03041
]
Complex A
U1 snRNP components
U1 related factors
134078255 (prpf40a)
Complex B
134078255 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
Glyco_hyd_101C
GAAD
Motif
Other DBs
NCBI-GeneID:
134078255
NCBI-ProteinID:
XP_062390028
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Position
4:9579919..9596322
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AA seq
872 aa
AA seq
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MPPPFMGPPGMPPHFPPMGMPPMGQRPPTMTPGMPPGMMPPMMPPMGGPMGQMPGMMPPM
MPGMMMPPRMPAASLQPTGPPGVSPVDSGASSASTTTPSATANDSPQDDQPKKKVWTEHK
SLDGKVYFYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSASKESRWT
KPKELEDLEAMIKAEENGTADAAAPGTGPAVAMPAQPEPAIIAAPVVDLEAAAAASLNAA
VMAEDPMSHMMTAPAMEIATETPVNNIEEAPGVEGPVSNDVNKEERPELVKKVYKWNTKE
EAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKE
EARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGEQEVWSTVPERDRLEIYEDVLFY
LAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDK
EDALICFEEHIRALEKEEEDEKQKGLLRERRRQRKNREAFQKFLDELHEHGQLHSMSAWM
EMYPTISSDIRFSNMLGQPVVCAVFTVGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDK
GFLVEINSTFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRK
EAAFRSMLKQATPPLEPEATWEGVRERFLKEAAFEDVTLESERKRIFKDFIHVLEHECQH
HHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDYHKKKKRSTSKSPSEHSSSGESERSYKK
SKKHKKKGKKRRHKSASPESDAERDRKGREKEREKDKENDKSRGKTRSSSKQKSPKRKSA
KEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctccttttatgggaccacctggaatgccgcctcatttccctcccatgggaatg
ccccccatgggacagaggccccccaccatgactcccggcatgccacctggcatgatgccg
cccatgatgccaccgatgggagggccaatgggacagatgccaggcatgatgccgcctatg
atgcccgggatgatgatgccaccccgcatgccagctgcgtcactgcagccaacaggaccg
cctggtgtaagccctgtagacagtggtgcctccagtgcttctacgacaactccaagcgca
actgcaaacgactccccacaagatgaccaaccaaagaagaaggtttggacggagcacaag
tctctggatggcaaggtgtacttctacaacaccgagaccaagcagtccacctgggagaag
cctgatgagctcaagtctcccgctgagcaaatgctgtctaagtgtccatggaaagagtac
aaatccgacactggcaaaccttactactacaactcggcgtcaaaggaatcgcgctggact
aagcccaaagagctggaggacctagaggctatgatcaaagcggaggagaacggcacggcc
gacgcggcggctccgggaaccgggcctgcggttgccatgccggcacagccagagcctgcc
atcatcgccgcccccgtcgtcgacctcgaggcggcggccgccgccagcctcaacgctgct
gtgatggccgaagacccgatgtcacacatgatgacggcgcctgccatggagatcgccacg
gagacacccgtcaacaacatcgaagaggcgcccggtgtggagggccccgtcagcaatgac
gtcaataaagaggagcggccagagctggtgaagaaggtctacaagtggaacaccaaggaa
gaggccaagcaggccttcaaggagctgctgaaggagaagggtgtctcctccaacgcctcc
tgggagcaagccatgaagatgatcatcaatgaccctcgctacagcgcgctgcccaagctg
agcgagaagaagcaggccttcaacgcgtacaaggtgcagacggagaaggaggagaaggag
gaggcgcgcatcaagtacaaggagtccaaggagaccttccagcgcttcctggagaaccac
gagaagatgacctccaccacccgatacaagaaagcagagcagatgtttggagagcaggag
gtgtggtccaccgtcccagagagggaccgactggagatctacgaggacgtgctcttctac
ctggccaagaaggagaaggaacaagccaagcagctgcgcaagaggaactgggaggcgctg
aagaacatcctggacaacatggccaacgtcacgtaccgcaccacctggtccgaggcgcag
cagtacctgctggacaaccccaccttcgccgaggacgaggagctccagaacatggataag
gaggacgctctgatctgcttcgaggagcacatccgcgcgctggagaaggaggaggaggac
gagaagcagaagggcctgctgcgggagcggaggcgtcagaggaagaacagagaggccttc
cagaaattcctggacgagttgcacgagcacgggcagctccactccatgtcggcctggatg
gagatgtaccccaccatcagctccgacatccgcttcagcaacatgctgggccagccagtg
gtttgtgctgtgttcactgtaggttccacacccctggacctgttcaagttctacgtggag
gacctgaaagcacgttaccatgacgagaagaggatcatcaaagacatcctgaaggacaaa
ggcttcctggtggagatcaacagcacctttgaggactttggctccgtcatcagctcagac
aagagagccaccacactggacgctggcaatatcaagctagcctttaatagcttgctggag
aaggcggaggcgcgggagagggagcgggagaaggaggaggcgaggaagatgaagaggaag
gaggctgcgttcaggagcatgctgaagcaggccacgccgccgctggagcccgaagccacc
tgggagggggtgcgcgagcgattcctaaaggaggctgcgtttgaggacgtgaccctggag
tccgagcgaaagaggatatttaaagatttcattcatgtcttggagcacgaatgtcagcac
catcattccaagaacaagaagcactcgaagaaatcgaagaagcaccacaggaagcgatcg
cgctcccgttcgggctcggagtcagaggatgatgactaccacaagaagaagaagcgctcg
acctccaagtccccatcagagcactcctcctccggggagtcagagaggagctacaaaaag
tcaaagaaacacaagaagaagggcaagaagaggcgtcacaagtcggcctcccccgagtcg
gacgcagagagagacaggaaagggcgtgagaaggagcgagagaaagacaaagagaacgac
aagtccaggggcaagacacgctcatcgtccaaacagaagtcccccaagaggaaatcggcg
aaagaggaggggggctgggatacatctggcagtgagctgagcgaaggcgagctggagaag
aggagacggacccttctagaacagctggacgccccctag
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