Sardina pilchardus (sardine): 134078327
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Entry
134078327 CDS
T10667
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a
KO
K07603
collagen type XVII alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134078327 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134078327
NCBI-ProteinID:
XP_062390166
LinkDB
All DBs
Position
1:complement(34882150..34920944)
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AA seq
1773 aa
AA seq
DB search
MDHLTSTKIINADGSLGGSAKVVTETVTTSSRLTSLPPKGASSVRVVSSSSSSSGGGTAA
ERRLVTRSGGASYASSSLSGGLSIESEEEFEEDTGGGFTSTSTVSGSAGSASEGTTTTST
TTRIISTGVSSSSSSSSSSALLEGLGAGSSSTSRYLSAAGEEGGEEGGGEGGGEGGGVES
AMSSGAGGSSSVTVTKYSSSSTQGSVWAGEGGESSTVTKYISSSGGSSSLSAGGGGGGGA
GSSSTTVTKYISSSGGSSSLSAEEGGGGGGGGGGSSSTTVTKYTSSSGGGGGGGGGGGGS
SSTTVTKLTKYSSSGGGSSSLTKYSSAIGSSLGVGGGSSAVTVTKYSASSMGMGGGVSGR
KGSASSSSAAAAVAYTPPPVEKKTMLTTRSASYEGSSSPTSSPEYTRKEYAAASAATRGR
THTKESEIRARLQSASPSARWTELDDVKRLLKGRSESISPPRSPTNTLPIPKKASVSDAQ
SGQYDSSTLDSTYMSSGSYGYHASAKNMSPTGTLQTSTVSGLQNNMNLSAATMTAGLTAG
SAVYGMQNNLATTTGGAITSNGLSAHTVYGVQKNVGSTAVASTAAVVPSSPTPSDDVFAK
DFKFMLLEKENAPAKKETERLIMSKDSGKQFTTTTTSGSYSEDSLKKEKMKVSSATETTT
ARADTSISITKAATKDKATYAEIRKDERAGGGGGGALGFCSWWKWLLGMLLLSLLSLGLL
CGLIALADDMRKLKARVETLEKSVGVASSSASASRFQAGPSTVNIVNPLDSAYAERGGGG
GGGIVRADNTIQLGASAPGQGTAAVDPVTLQRTVQHLLRAELQSESIRATLASSVRGERG
EPGPKGDAGHPGAKGEAGFPGMPGPPGLLGHPGQEGPRGPKGSQGDAGADGPPGQRGREG
PGGVRGEPGPPGAGEKGERGSPGDPGGPGPVGPSGPAGPKGEAGGHGAPGLPGSPGPQGF
RGEAGEPGPKGDKGPAGPPGNKGDHGEKGPRGSAGEPGQPGPAGPPGEKGPKGSVGLPGA
DGEKGPRGEQGQSGLQGPRGPAGPPGDTGSPGVPGLQGPPGVPGLPGKPGDRGEAGEPGR
VVNAAGSSAVAIPGPPGPAGSPGAAGPPGLSGPIGPAGLPGQSGPKGEKGEKGEKGEKGE
KGEKGEKGADGAPGAAAKTNGKDTDKDAAKPEPVPGKPGPPGPPGPPGPSGAAGPPGEGK
AGPPGPLGPAGPPGKEGVGKPGPPGPTGEPGRPVVGSPGPPGRPGPKGEPGEGGEQGYRG
EQGPPGAPGPLGEPGLGIPGQPGPPGLPGSQGPEGSQGPEGAQGPEGPEGPQGPRGEAGI
PGAPGIPGYSSNQGSPAPGPPGPPGPPGAPGAPAAGTDSGSVGQQIAQYLQSDGIRSYLA
GQPGSPGPVGPPGPIGPPGYPGTPGSSSGPTASVDDIAARVLSYVQRAGAGAGAVGRPGP
PGPPGPPGGASGPSINDIMSIMQREEVRRFLIGPPGAPGAPGAPGAPSGGSYGADPQEVA
SRVLGMLNERGMVGQPGLPGLPGPPGPPGFPGNAYDITSLLRNSDYQGLQGPQGPIGPPG
LPGPPGPPGSGGRNLEDIRDYLTTVGLTGSPGPPGPPGPQGPPGGGRQGLLSYASNEYES
IQAEVQKYFRNHNFAGPPGPPGPAGPKGESGDPGHPRSQLYRGVQTVDYPNMALRVTDYI
KSHDLLRDDLEDRPQVIQGPPGPPGPPGPSASDQNISELVDYMKAHGGLVGSPGRPGLPG
PKGEQGFPGLPGPQGEKGEAASGRQRRRRSTTA
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggaccatttaacatcaactaagattatcaacgcagatggaagcttgggagggtctgcc
aaagtcgtcactgagacagtaaccacttcaagcaggctgacatcattacctccaaagggc
gccagtagtgttcgagtggtctcctccagcagctcctcgagcggaggaggcacagcagcg
gagaggaggctcgtcactcggagcggcggagccagctatgccagctcttccttgtccggt
ggtctgtcgatagagagtgaggaggagttcgaggaggacacaggtgggggtttcacctcc
acctccacggtgagtggcagcgcaggctcggcctcggagggcaccaccaccaccagcacc
accacccgaatcatctccacaggagtctcatcttcatcatcttcctcatcctcatcggcc
ttgctggaagggctcggcgcaggatcgagcagcacctcccgttacctgtcagcagcaggt
gaagaaggaggagaagaaggaggaggtgaaggaggaggtgaaggaggaggtgtagagtca
gcgatgtcgtcaggagctggagggtccagctcggtcaccgtcaccaagtacagcagctcc
tccacccaggggtctgtatgggctggagaaggtggagagagttccaccgtcaccaaatac
atctcctcttcagggggatcttcatctttgagtgcaggaggaggaggaggaggaggagca
gggtctagctccaccaccgtcaccaaatatatctcctcttcgggaggctcttcatctttg
agtgcagaagaaggaggaggaggaggaggaggaggaggagggtctagttccaccaccgtc
accaaatacacctcttcttcaggaggaggaggaggaggaggaggaggaggaggagggtct
agttccaccaccgtcaccaagctcaccaagtacagctcgtctggcgggggctcctccagc
ctcaccaagtacagctcggccatcgggagctccctgggggtcggaggaggctccagcgcc
gtgacagtcaccaagtacagcgcctcctccatgggcatgggcgggggggtcagcgggcgg
aaaggctcggcgtcgtcctcctccgccgccgctgccgtcgcgtacacgccaccccccgtg
gagaagaagacgatgctcaccacgcgctcagcgagctacgaaggaagttccagtccgacc
tcgtcccccgagtacacaaggaaagagtatgctgcagccagcgcggccactagggggcgt
actcacaccaaagagagtgagatccgggcaagattgcagagtgcttctccttcagcaaga
tggactgagctggatgatgtcaagaggctgctgaaggggcgctctgagagcatcagtccc
ccacgctcgccaacaaacaccctccccatccccaagaaggccagcgtctctgacgcacaa
tcaggccagtatgacagctctacgctggactccacctacatgtcctcggggagctatggc
taccacgccagcgccaagaacatgagtcccaccggcaccctgcagaccagcacagtttct
ggcctacagaacaacatgaacctgagtgctgccaccatgactgctggactcacagctggc
agtgcagtctatgggatgcagaacaacctggccaccaccactgggggtgctataacgtca
aacggtctcagtgctcacacagtgtacggtgttcagaagaacgttggaagcactgctgta
gcatccaccgctgcagtggtgcccagtagtccaacgccgagcgacgacgtcttcgccaaa
gacttcaagttcatgctgctggagaaggagaacgcgccggccaagaaggagacggagcgc
ctgatcatgtccaaggacagcggcaagcagttcaccaccaccaccaccagcggctcttac
tccgaggactccctgaagaaggagaagatgaaggtgtccagcgccactgagaccaccaca
gccagggcagacaccagcatttcaatcacaaaagcagcaactaaggacaaggccacttat
gcagagatccgtaaggatgagcgtgcgggtggtggagggggcggggcgctgggcttctgc
tcctggtggaagtggctgctggggatgctgctgctctccctgctgtccctgggcctgctg
tgtggcctcatcgctctggcggacgacatgcggaagctgaaggcccgcgtggagacgctc
gagaagagcgtgggcgtcgcctcctcctccgcctccgccagccgcttccaggccggcccg
tccaccgtcaacatcgtcaacccgctggactcggcgtacgcggagcgaggcggcggcggc
ggtggcggcatcgttcgcgctgacaacaccatccagctgggcgcgtctgctccgggtcag
ggcacggcggccgtggacccggtcaccctgcagcgcaccgtccagcacctcctgagagcc
gagctgcagtccgagtccatacgagctacactagcgtcatcagtgaggggggagagagga
gaacccggacctaaaggtgacgctggacatcctggagctaaaggagaggcagggttccct
ggtatgccaggtcctcctggtttgctggggcatcctggacaggaaggacccagaggcccc
aagggatctcaaggtgatgccggtgctgatgggccaccaggccagaggggtcgtgaggga
ccagggggcgtccgaggggagccagggccgccgggcgccggagagaaaggagagagaggt
tccccaggagaccccggtggtccagggcctgttgggccatcagggccagctggtcccaaa
ggtgaagcaggaggacatggtgctcctggtcttccaggtagtcctggtcctcagggtttc
cgtggcgaagctggagaacctgggccaaagggtgacaaagggccagctggtccacctgga
aacaaaggtgatcatggtgagaaaggtcctcgaggttcagcaggagagcctggtcaacct
ggtccagcaggaccacctggagagaagggacctaaaggatctgtgggtcttcctggagca
gatggcgagaaaggcccccgaggtgaacaaggacaaagtggcttacaaggacctagagga
ccagcgggaccaccaggagatacaggatcaccaggagtaccaggtcttcagggaccacca
ggtgtaccaggacttccaggaaagcccggagacagaggagaagccggtgaacctggtaga
gttgttaatgccgccgggtccagtgccgtggctatccctggaccccctgggccagcaggg
tcccctggtgccgccggtcctcctgggttgtcaggtcccattggtcctgctggccttcct
ggccaatctggacccaagggcgagaagggcgagaagggagaaaaaggagaaaagggggag
aaaggagagaaaggagagaaaggcgctgatggtgcacctggagctgcagcaaagaccaac
gggaaagacacagacaaggatgcagccaaacctgaacctgtccctgggaaaccgggtccc
cctggacctcctggacccccaggcccgtctggcgcagctggccctccaggtgagggtaaa
gccggtccccccggacctcttggtcctgctgggccaccaggaaaggaaggtgttggcaaa
cctggtccccctggtccgaccggtgaacctggaaggccagtagtaggatctcctggtcca
cctggtcgcccagggccaaagggagagccaggtgagggtggcgaacaaggataccgagga
gagcaaggtccaccaggtgcaccgggtcccctcggagagcctggtcttggcattccaggc
cagcctggacctccaggactcccaggatcccaaggcccagagggctcacaaggcccagaa
ggagctcagggaccagagggtcctgaaggtccacaaggtccaagaggtgaagctggtatt
ccgggtgcccctggaattcctggttattccagcaatcagggctcacctgctccaggacca
ccagggcctcctggacctccaggcgccccgggggctccagcagcggggacagactctgga
tctgttggccagcagatcgctcagtatctccagagtgatggtatcaggagttatctggcg
ggacaacctggttccccgggccctgttggtcctcctggcccgattggtcctcctggatac
cccggaaccccgggctcatcttcaggccctactgcctcagtggatgacattgctgcccgc
gtccttagctatgttcaaagggcaggggcaggggcaggtgcagtgggtcgccctggtcct
ccaggacctccaggacctcctggtggtgcaagcggtccgtccatcaacgacatcatgtcc
atcatgcagagagaggaggtgaggaggtttttgattggtcctcctggagcgcctggagcc
cccggagcccctggtgcacccagtgggggttcatacggagcagatccacaggaagtggcg
tcgcgagtcctcggcatgttgaacgagcgtggaatggttggacagccaggactccctggt
cttcccggtcctcctggtcctccaggatttcctgggaatgcttatgacatcacctccttg
ctgcggaattcggactaccagggccttcaaggaccccagggcccgatcggacctcctggc
cttcctggtcctcctggaccacctgggtcagggggaaggaacctggaggacattcgggac
tatctgaccacggttggtctgacagggtcccccggccctcctgggccacctgggcctcag
gggccccccggcggggggagacaaggactgctgtcgtacgcctccaacgagtacgagagc
attcaggcagaggtgcagaagtacttcagaaatcataactttgcaggaccaccagggcca
cctggtcctgcagggccaaagggggagagtggcgatcccggacacccccgatcccagctc
taccgaggggtccaaactgtggactaccccaacatggctctgagagtgacggactacatc
aaatctcatgacttgctgcgcgatgacttggaggatcgtcctcaggtcatccagggaccc
cctggacctccaggtcccccaggcccatccgcttctgaccaaaacatctcagagctcgtg
gactacatgaaggcacacggaggtctcgtcggctctcccggtagaccagggctcccaggc
ccgaaaggggaacaaggtttcccagggcttcctggacctcaaggggagaaaggtgaagct
gcatcgggaagacagagacggcgtcgaagcaccacagcgtga
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