Sardina pilchardus (sardine): 134078400
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Entry
134078400 CDS
T10667
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134078400 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134078400 (sf3b1)
03036 Chromosome and associated proteins [BR:
spil03036
]
134078400 (sf3b1)
Spliceosome [BR:
spil03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
134078400 (sf3b1)
Complex B
134078400 (sf3b1)
Complex C
U2 SnRNP specific factors
134078400 (sf3b1)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
134078400 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
DUF5870
HEAT_Maestro
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
134078400
NCBI-ProteinID:
XP_062390306
LinkDB
All DBs
Position
4:15597449..15612069
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AA seq
1322 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALVEQGEEGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIVDREDEY
KARRRQMIISPERLDPFADGGKTPDPKQQARTYMDVMREQHLSKEEKEIRQQLLEKSKSG
DLKVVSQNGSGASQAPTAAAAAAAAAKRKRRWDQTADPGTPSNSTPKKLSSWDQADAGSE
TPGHTPGHTPSNSRWDETPGRPKGSETPGATPSSRMWEPTPSHTPAGAATPGRDATPGHG
SSTPSVRKNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETP
ASQIGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDE
ELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQQEDRSMKQVNDQPSG
NLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDK
AREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLL
IDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIP
SLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR
TISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYA
NYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHR
MALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAA
DIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNN
KSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN
VIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFEL
LELLKAHKKAIRRAAVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET
CSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL
VHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIG
PCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPFVRFELEY
FL
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagacatcgaggcgcagatcctggagatccagggg
atgaaagccgccctggtggagcaaggagaagagggtgttgggctggattccactggatac
tatgaccaggagatctatggaggcagcgacagccgctttgccggatatgtcacctccatt
gctgccaatgaacaggaggatgacgacgaggaggactcttcgaccagtttactgggtcaa
aagaaaccagggtaccatgctccggtggctatacttaattcaataccacagtccgatgag
cagtacgatccgtttgcggagcaccgcccacagaagatcgtggaccgcgaggacgagtac
aaagcccgcaggcggcagatgatcatctctccagagcgactcgacccgtttgcagatggg
gggaaaacgccagacccaaagcagcaggctaggacctacatggacgtcatgagggagcag
cacctgagcaaggaagagaaagagatcaggcagcagctgttggagaagtccaagtccgga
gacctgaaagtcgtgagccagaacggctctggtgcctcacaagcccccactgccgctgcc
gccgccgccgccgccgccaagcgcaagcgccgctgggatcagaccgctgacccgggcacg
cccagcaactccacccccaagaaactgtccagctgggaccaggctgacgctggctctgag
actccgggacacacacctggacacactccctccaacagccgctgggacgagaccccaggt
cgccccaagggcagcgagacgcccggcgccacccccagctcccgcatgtgggaacccacc
cctagccacacccccgccggcgccgccacgcccggccgagacgccacccccggccacggc
agcagcacgcccagcgtgcgcaagaaccgctgggacgagacgccaaagaccgagagagag
acccctggccatggcagcggttgggccgagacaccgcgcacagaccgaggcgaagagtcc
gtgggtgagacgcccaccccgggcgccagcaagaggaagtcccgctgggacgaaacgccc
gccagccagatcggctcctccacccctctgctcacacccgggaaaactcccatcggcacg
ccagccatgaacatggccaccccaaccccaggtcacctgatgagcatgaccccagagcag
ctgcaggcctggcgctgggagagggagatcgacgagaggaaccgcccgctcaccgacgag
gagctggacgccatgttcccagagggatacaaggttctgccaccgccagcgggctatgtt
cccatccgcaccccggcccgcaagctctccgccacgcccactcccatcgggggcatgact
gggttccacatgcagcaggaggaccgctccatgaagcaggtcaacgaccagccctccggc
aacctgcccttcctcaagccagacgacatccagtacttcgacaagctcttggtggaggtg
gatgagtccactctgagccccgaggaacagaaggagcgcaagatcatgaagctgctgctg
aagatcaaaaacggcaccccacccatgagaaaggctgctctgagacagatcacagacaag
gcgcgagagtttggcgctggacccctcttcaaccaaatcctgcccctgctcatgtctccc
acactggaggaccaggagcgccatctgctggtgaaagtcattgatcgcatcctgtacaag
ctggatgacttggtcagaccatatgtacacaagatcctggtggttatcgagcccctgctg
attgatgaagattactacgccagagtggaaggcagagagatcatctctaatttggccaag
gccgctggtttggccaccatgatctccaccatgaggcccgacattgacaacatggacgag
tacgtgagaaacaccacggcccgtgcctttgccgtggtggcgtccgccctgggcatcccc
tccctgctgcccttcctcaaggccgtgtgcaagagcaagaagtcctggcaggctcgccac
actggcatcaagatcgtccagcagatcgccatcctcatgggctgtgccatcctgccccac
ttgcgcagcttggtggagatcattgaacatggtctggtggacgagcagcagaaggtgcgt
accatcagtgccctggctatcgctgccctggctgaagctgctaccccatacggtatcgag
tccttcgactccgtgctgaagcccctctggaagggtatcaggcaacacagaggaaagggt
ctggccgccttcctgaaagccatcggttatctgatcccgctcatggacgccgagtacgcc
aactactacaccagggaagtgatgcttatcctcatccgagagttccagtctcccgacgag
gagatgaagaagattgtgctcaaggtggtgaagcagtgctgtggcacagatggtgttgag
gccaactacattaagaccgagatcctccccccgttcttcaagcacttctggcagcacaga
atggccttggacagacgcaactacagacagctggtagacaccacggtggagctggccaat
aaggtgggggcggcggaaatcatctctcgcatcgtggacgacctgaaggacgaggccgag
cagtacaggaagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgcc
gacatcgaccacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggag
cagaccacggaggactctgtgatgctgaatggttttggcactgtggtcaacgctctgggc
aagcgcgtgaagccctacctgcctcagatctgcggtaccgtcctctggcgtctcaacaac
aagtctgccaaagtccgtcagcaggccgccgacctcatctcgcgtacggccgtggtgatg
aagacatgtcaggaggagaagctgatgggtcatttgggtgtggtgctgtacgagtacctg
ggagaggagtacccagaagtcctgggcagtatccttggagctctaaaggccattgttaac
gtcatcggtatgcataagatgacgccacccatcaaagacttgcttccgcgtttgactccc
attctgaagaacaggcacgagaaggtgcaggagaactgtattgacctggtgggcagaatt
gctgacaggggtgctgaatacgtctctgcccgcgagtggatgcgcatctgcttcgagctg
ctggagctcctgaaggcccacaagaaggccatccgcagagctgccgtcaacactttcggc
tacatcgccaaagctatcggtcctcatgacgtgttggccacactgctcaacaacctgaag
gtgcaggagcgtcagaaccgcgtgtgcacgacggtggccatcgccatcgtggccgagacg
tgttctcccttcaccgtgctcccggcgctgatgaacgagtaccgggtgcccgagctcaac
gtgcagaacggcgtgctcaagtcgctctccttcctcttcgagtacatcggcgagatgggc
aaggactacatctacgccgtcacgcctctcctcgaggacgcgctgatggacagagacctg
gtccacaggcaaacggcgagcgctgtggtgcagcacatgtccctgggcgtgtacggcttc
ggctgcgaggactcgctcaaccacctgctcaactacgtgtggcccaacgtgttcgagacg
tcgcctcacgtcatccaggccgtgatgggcgcactggagggcctgcgggtagccatcgga
ccctgccgcatgctgcagtactgcctacagggtctgttccacccagcccgaaaggtgcga
gatgtgtactggaagatctacaactccatctacatcggttcccaagatgccctcatcgcc
cactacccactggtctacaacgacgagaagaacccttttgttcgatttgagttggagtac
ttcctgtga
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