KEGG   Sardina pilchardus (sardine): 134078400
Entry
134078400         CDS       T10667                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134078400 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spil03041]
    134078400 (sf3b1)
   03036 Chromosome and associated proteins [BR:spil03036]
    134078400 (sf3b1)
Spliceosome [BR:spil03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    134078400 (sf3b1)
 Complex B
    134078400 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    134078400 (sf3b1)
Chromosome and associated proteins [BR:spil03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    134078400 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N DUF5870 HEAT_Maestro UNC45-central DUF2298
Other DBs
NCBI-GeneID: 134078400
NCBI-ProteinID: XP_062390306
LinkDB
Position
4:15597449..15612069
AA seq 1322 aa
MAKIAKTHEDIEAQILEIQGMKAALVEQGEEGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIVDREDEY
KARRRQMIISPERLDPFADGGKTPDPKQQARTYMDVMREQHLSKEEKEIRQQLLEKSKSG
DLKVVSQNGSGASQAPTAAAAAAAAAKRKRRWDQTADPGTPSNSTPKKLSSWDQADAGSE
TPGHTPGHTPSNSRWDETPGRPKGSETPGATPSSRMWEPTPSHTPAGAATPGRDATPGHG
SSTPSVRKNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETP
ASQIGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDE
ELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQQEDRSMKQVNDQPSG
NLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDK
AREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLL
IDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIP
SLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR
TISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYA
NYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHR
MALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAA
DIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNN
KSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN
VIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFEL
LELLKAHKKAIRRAAVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET
CSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL
VHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIG
PCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPFVRFELEY
FL
NT seq 3969 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcgcagatcctggagatccagggg
atgaaagccgccctggtggagcaaggagaagagggtgttgggctggattccactggatac
tatgaccaggagatctatggaggcagcgacagccgctttgccggatatgtcacctccatt
gctgccaatgaacaggaggatgacgacgaggaggactcttcgaccagtttactgggtcaa
aagaaaccagggtaccatgctccggtggctatacttaattcaataccacagtccgatgag
cagtacgatccgtttgcggagcaccgcccacagaagatcgtggaccgcgaggacgagtac
aaagcccgcaggcggcagatgatcatctctccagagcgactcgacccgtttgcagatggg
gggaaaacgccagacccaaagcagcaggctaggacctacatggacgtcatgagggagcag
cacctgagcaaggaagagaaagagatcaggcagcagctgttggagaagtccaagtccgga
gacctgaaagtcgtgagccagaacggctctggtgcctcacaagcccccactgccgctgcc
gccgccgccgccgccgccaagcgcaagcgccgctgggatcagaccgctgacccgggcacg
cccagcaactccacccccaagaaactgtccagctgggaccaggctgacgctggctctgag
actccgggacacacacctggacacactccctccaacagccgctgggacgagaccccaggt
cgccccaagggcagcgagacgcccggcgccacccccagctcccgcatgtgggaacccacc
cctagccacacccccgccggcgccgccacgcccggccgagacgccacccccggccacggc
agcagcacgcccagcgtgcgcaagaaccgctgggacgagacgccaaagaccgagagagag
acccctggccatggcagcggttgggccgagacaccgcgcacagaccgaggcgaagagtcc
gtgggtgagacgcccaccccgggcgccagcaagaggaagtcccgctgggacgaaacgccc
gccagccagatcggctcctccacccctctgctcacacccgggaaaactcccatcggcacg
ccagccatgaacatggccaccccaaccccaggtcacctgatgagcatgaccccagagcag
ctgcaggcctggcgctgggagagggagatcgacgagaggaaccgcccgctcaccgacgag
gagctggacgccatgttcccagagggatacaaggttctgccaccgccagcgggctatgtt
cccatccgcaccccggcccgcaagctctccgccacgcccactcccatcgggggcatgact
gggttccacatgcagcaggaggaccgctccatgaagcaggtcaacgaccagccctccggc
aacctgcccttcctcaagccagacgacatccagtacttcgacaagctcttggtggaggtg
gatgagtccactctgagccccgaggaacagaaggagcgcaagatcatgaagctgctgctg
aagatcaaaaacggcaccccacccatgagaaaggctgctctgagacagatcacagacaag
gcgcgagagtttggcgctggacccctcttcaaccaaatcctgcccctgctcatgtctccc
acactggaggaccaggagcgccatctgctggtgaaagtcattgatcgcatcctgtacaag
ctggatgacttggtcagaccatatgtacacaagatcctggtggttatcgagcccctgctg
attgatgaagattactacgccagagtggaaggcagagagatcatctctaatttggccaag
gccgctggtttggccaccatgatctccaccatgaggcccgacattgacaacatggacgag
tacgtgagaaacaccacggcccgtgcctttgccgtggtggcgtccgccctgggcatcccc
tccctgctgcccttcctcaaggccgtgtgcaagagcaagaagtcctggcaggctcgccac
actggcatcaagatcgtccagcagatcgccatcctcatgggctgtgccatcctgccccac
ttgcgcagcttggtggagatcattgaacatggtctggtggacgagcagcagaaggtgcgt
accatcagtgccctggctatcgctgccctggctgaagctgctaccccatacggtatcgag
tccttcgactccgtgctgaagcccctctggaagggtatcaggcaacacagaggaaagggt
ctggccgccttcctgaaagccatcggttatctgatcccgctcatggacgccgagtacgcc
aactactacaccagggaagtgatgcttatcctcatccgagagttccagtctcccgacgag
gagatgaagaagattgtgctcaaggtggtgaagcagtgctgtggcacagatggtgttgag
gccaactacattaagaccgagatcctccccccgttcttcaagcacttctggcagcacaga
atggccttggacagacgcaactacagacagctggtagacaccacggtggagctggccaat
aaggtgggggcggcggaaatcatctctcgcatcgtggacgacctgaaggacgaggccgag
cagtacaggaagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgcc
gacatcgaccacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggag
cagaccacggaggactctgtgatgctgaatggttttggcactgtggtcaacgctctgggc
aagcgcgtgaagccctacctgcctcagatctgcggtaccgtcctctggcgtctcaacaac
aagtctgccaaagtccgtcagcaggccgccgacctcatctcgcgtacggccgtggtgatg
aagacatgtcaggaggagaagctgatgggtcatttgggtgtggtgctgtacgagtacctg
ggagaggagtacccagaagtcctgggcagtatccttggagctctaaaggccattgttaac
gtcatcggtatgcataagatgacgccacccatcaaagacttgcttccgcgtttgactccc
attctgaagaacaggcacgagaaggtgcaggagaactgtattgacctggtgggcagaatt
gctgacaggggtgctgaatacgtctctgcccgcgagtggatgcgcatctgcttcgagctg
ctggagctcctgaaggcccacaagaaggccatccgcagagctgccgtcaacactttcggc
tacatcgccaaagctatcggtcctcatgacgtgttggccacactgctcaacaacctgaag
gtgcaggagcgtcagaaccgcgtgtgcacgacggtggccatcgccatcgtggccgagacg
tgttctcccttcaccgtgctcccggcgctgatgaacgagtaccgggtgcccgagctcaac
gtgcagaacggcgtgctcaagtcgctctccttcctcttcgagtacatcggcgagatgggc
aaggactacatctacgccgtcacgcctctcctcgaggacgcgctgatggacagagacctg
gtccacaggcaaacggcgagcgctgtggtgcagcacatgtccctgggcgtgtacggcttc
ggctgcgaggactcgctcaaccacctgctcaactacgtgtggcccaacgtgttcgagacg
tcgcctcacgtcatccaggccgtgatgggcgcactggagggcctgcgggtagccatcgga
ccctgccgcatgctgcagtactgcctacagggtctgttccacccagcccgaaaggtgcga
gatgtgtactggaagatctacaactccatctacatcggttcccaagatgccctcatcgcc
cactacccactggtctacaacgacgagaagaacccttttgttcgatttgagttggagtac
ttcctgtga

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