Sardina pilchardus (sardine): 134078438
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Entry
134078438 CDS
T10667
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04382
Cornified envelope formation
spil04510
Focal adhesion
spil04512
ECM-receptor interaction
spil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134078438 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134078438 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134078438 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134078438 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spil04147
]
134078438 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
spil00536
]
134078438 (col4a2)
Exosome [BR:
spil04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134078438 (col4a2)
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134078438 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134078438
NCBI-ProteinID:
XP_062390371
LinkDB
All DBs
Position
4:complement(16848487..16934626)
Genome browser
AA seq
1676 aa
AA seq
DB search
MKFEVRMEGVMGHLHIRKTKLLRFLILCLTFVVLISETNAGGKKYNGPCGGRDCSGGCKC
YPEKGGRGQPGPLGPQGPKGPTGRDGDPGLQGPKGESGDKGRTGYMGPKGSVGMTGIPGF
SGGNGIPGHPGQGGPRGKPGADGCNGTRGDAGFPGISGPSGRPGYNGHPGRKGEKGDDLD
LHIFMRRFQGEAGLPGGPGYPGNIGNPGWRGPSGMIGPQGPPGLPGPKGEKGTMTQVIKG
EKGDSGDTGEPGPPGNITYPHTGVKSPLDFRGVKGEQGDYADNKGEDGIMGMPGQRGLPG
LNGQKGQLGDSGYPGTPGRPGLKGVRGDAGPLIYNDFRPPGVGPIGPEGDLGPQGETGPV
GEKGLPGIPGHPAFEQQGLDLFGPFGDKGFRGQKGSEGEAGTPATRAGPPGLHGLDGDPG
FDGPQGSWGEHLKGAPGPGGRPGSAGRRGETGEHGDCECDSVNSPAGSPGPAGSIGSYGM
QGEFGQQGDQGDSGRPGSPGMPGFPGRDGIPGPKGRKGETTVATQKGLPGDAGDPGRSGT
PGPQGINGINGLPGSPGLHGLQGESVVGDSGDPGYSGRPGIRGLSGLQGEPGRALSTTKG
QKGLPGDAGIRGHGGMPGPAGTPGGCIQVGERGLVYKEGECDVEPGPPGEPGLHGLPGMD
GMPGFPGLKGFAGLSGESGLKGERGDPGHGGLPGPSGFTGIRGDLGTPGYKGPPGGAGRP
GLDGRNGEPGAKGAHGDVLDASTGAPGEPGPAGHMGEVGLQGPSGTRGYQGMTGMPGMIG
FKGDLGPYGAEGEIGRPGPAGKIGYPGQPGTAGIPGPPGSVGLPGFPGDRGSDGDPGVPG
PFGMKGFPGVPGSDGNPGSTGLLGDPGNPGEPGHIGVVGLKGYRGSPGMAGFSGMPGVSG
HKGYSGFPGEPGLYGEFGLKGFRGRPGLKGERGLPGKPGEFRMDDVVKKAMKEMKGAKGD
LGTSGPHGFPGPRGPKGLPGFPGSSGHDGFPGEPSDSKGDVGDPGNPGWPGQKGMPGPTG
PQGIGGFPGMPGYRGEKGGTGAYGRSGESGLKGFKGDLGPTVDLPGATGRRGEPGLPGYS
GGPGQFGVTGDRGNPGLSGIEGMKGGPGDFGFVGIRGSDGRQGTPGQQGQKGWPGVPGGH
GTKGAEGHSGQPGFPGQTGIGGLDGLKGNKGLPGMPGVDTVGPPGHPGVKGQKGEAGVPS
TLAGEQGGYGPKGYSGDAGDQGRPGPQGPQGPPGFGGTSDRPGRPGDAGFPGQKGLPGFP
GPRGTPGIPSTLGDKGERGIGGLFGLTGLRGLQGDKGQEGFPGPNGISGQKGFKGDTGMM
GPPGKTGFKGDRGPTGPKGQTGQPGLPGVTGSKGRPPIPVKVPAERGPPGPPGEWGPGGT
KGAPGYPGPYGDPGFVGHKGDKGMPGVSGQSGTPGFRGEPGYQGYPGIQGLEGSRGLPGV
PGRGGMPGRSVSVGYLLVKHSQTDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAG
SCVPRFSTMPFLYCNPNDLCRYADRNDKSFWLSTTAPIPMMPVEGEEIKPYISRCSVCEA
PSVAIAVHSQDVTIPQCPVGWRSLWIGYSFLMHSGAGKQGGGQLLVSPGSCLEDFRSTPF
IECNGAKGTCHYFANKYSFWLASMEQNFNSSPGSETLKAGQLLSRIGRCQVCMKNL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagtacggatggaaggggtgatgggccacctacacatcaggaaaacgaaa
cttttaaggtttctgattttgtgcctgacgttcgtcgtcttaatatctgaaacaaacgca
ggcggtaagaagtacaacggaccttgcggtggaagagactgcagtggaggctgcaaatgc
tatcctgagaaaggaggcaggggccagcctgggcctctcggtcctcaggggcccaagggg
ccgaccgggcgtgacggggaccccggcctgcaggggcccaaaggagagagtggggacaaa
ggacgcacaggctacatgggccctaaaggatcggtgggaatgacaggaattccaggtttc
tcaggaggcaatggcattccaggccacccaggacaaggaggtccgcggggcaaacccggg
gcagatggctgcaacgggaccaggggcgacgcagggttccccgggatctcaggcccttct
ggcagaccaggatacaatggtcatccaggtcggaaaggagagaaaggagatgatttggac
ctgcacatcttcatgaggagattccagggagaggcaggccttccaggtggtcccggatat
cccggaaacattggtaacccaggttggagaggacccagtggaatgatcgggccacagggg
ccacctggtttacctggacccaaaggcgaaaagggcacaatgacccaagtgatcaagggg
gagaaaggagactcgggtgacactggtgagccagggcctccaggaaacatcacttatccc
cacaccggcgtgaaatctccactggacttcagaggagtcaaaggagaacagggagactat
gctgacaacaaaggagaagacggcattatggggatgccaggacaacgggggttgcctggt
ttgaatggacaaaaaggacaattgggtgactccggatatccaggaactcccggaagacca
gggctgaagggtgtgagaggagatgctggcccgctcatctacaatgacttcagaccgcca
ggagttggaccgattggcccggagggagatcttgggccccagggagagactggaccggta
ggggagaaaggcttgcctgggatccccggacatccagcctttgaacaacaaggattggac
ttatttggcccgtttggtgacaagggcttcagaggccaaaagggttccgagggggaggca
ggaacccccgccacccgggcgggaccccctggactccacggcctcgatggcgacccggga
ttcgatggacctcaaggatcatggggagagcatcttaaaggagcaccaggcccgggcgga
agaccaggctcagctggacggagaggagagacaggagagcatggtgactgcgagtgtgac
tctgtgaactcccctgccggctcccccggtcctgccggtagcatcgggagctacggcatg
cagggagagttcggccagcagggagaccaaggggactcagggcggcctggttcacctggc
atgcctggttttccaggtcgtgatggcatacctggacccaagggaaggaaaggagaaacc
acagttgcgactcagaaaggattgccaggggacgcaggagacccaggacgatcaggaacc
cctggaccacagggcatcaacggcatcaacgggctccccggttctcctggactccacggc
cttcaaggcgagtccgtagtgggtgattctggagatccaggctacagcggccgaccagga
atacgtggtctctccggcctacagggagagcccggtcgggcgttaagcacaaccaaaggc
cagaagggtttgcctggcgacgccggaatccgaggtcacggtggaatgcccggtcccgcc
ggaacgccaggaggctgtattcaagttggagaacgaggactggtgtataaagaaggggaa
tgcgatgtcgagccgggacctcccggtgagccgggactccacggtcttcctggaatggac
ggtatgccagggtttccagggctcaaaggtttcgcagggctgtccggcgagtctgggctc
aaaggagagcgcggagatcctggccacggtggacttcccgggccgagcggcttcaccggt
atacgcggtgacctgggtacacctggttacaaaggaccccccggaggcgctgggcggccc
ggcctcgatggccgcaacggtgaaccaggtgcgaagggagcccacggcgatgtgttagac
gcctccactggagcccctggtgagcctggaccggctgggcatatgggagaggttggatta
caagggccgtcaggcacccggggataccaaggaatgactgggatgcctggcatgatcggc
ttcaagggtgaccttgggccttatggcgctgagggagaaataggtcgccccgggccggca
ggaaagatcgggtatcctggacagcctgggaccgccggtattccaggacctcccggatcc
gtcggactgccaggctttcctggagatcggggaagtgacggtgaccctggagtcccaggg
cccttcggcatgaaggggtttcctggtgttcctggcagtgacgggaaccctggaagtaca
gggttactgggggatcccggaaatccaggcgaaccgggacatattggtgtcgttggtttg
aaaggttaccgaggttctccaggtatggcaggcttcagtggcatgccaggggtgagcgga
cataagggatattctggttttcctggagagcctgggctttatggagaattcggcctcaag
ggtttcaggggcagacctggtctaaagggggagagaggtttgcccggcaaaccgggagag
ttccgcatggacgacgtggtgaagaaggcgatgaaggagatgaagggggccaagggggac
ctaggcacatcagggccgcacggcttccccggacccagagggccaaaaggcctcccaggc
tttccaggttcctcgggtcatgatggcttcccaggagagcccagcgatagcaagggtgac
gtgggagatccgggaaatccggggtggcccggccagaaggggatgccaggtcccaccgga
ccgcaaggaatcggaggattccctggaatgccgggctacaggggggagaaaggtggaacc
ggtgcctatgggcgatcaggagaatccggattaaagggtttcaaaggtgacctgggtcct
acagtggatctccctggagctactgggcgtcgcggtgagccagggttgccaggttactca
ggtggaccgggccagtttggtgtaactggggacagaggcaaccctggcctctctggtatc
gagggcatgaaaggaggaccaggtgacttcggctttgttggaatcagagggtctgacgga
cggcaaggaacgcctggccagcagggccagaagggctggcctggagtccccggtggccac
ggaaccaaaggagctgaaggacattctgggcaaccaggcttccccggtcagacaggaatc
ggtggacttgatgggctgaaaggaaacaagggattgcccggcatgccaggtgttgacaca
gtgggaccaccaggccaccctggcgttaaaggccagaaaggagaagctggcgtccccagc
actctagccggtgaacagggaggatatggccccaaaggatattcaggggatgcaggtgat
caaggacggcctggccctcaaggtccacagggtccccctgggttcggaggaacctcagac
agacctgggcgccctggagatgctggttttcccggacagaaaggactcccaggtttccct
ggacccagaggcacgccaggcatcccctcgacgcttggggacaagggagagaggggcata
ggcggcttgtttggcctgactggtctaaggggtctccagggtgacaaggggcaggaaggg
ttccctggaccaaacggaatctcaggacagaaagggttcaagggagacacaggcatgatg
ggacctcctggcaagacaggcttcaaaggagaccgcggccccactggtcccaagggccag
actggacaaccaggtctcccgggagtcacagggtccaagggacgtcctccgatcccagtc
aaagtccccgcggagagaggtccaccagggccccctggagaatggggacccggaggcacg
aaaggagcacctggttacccaggaccatatggagacccaggctttgtggggcataaagga
gacaaaggaatgccaggtgtcagtggacagtcgggcacgcctggtttccgtggagagcca
ggatatcagggataccccggtattcaaggcctggaaggttctcggggcctccctggcgtc
cctggtcgcggtggcatgcctgggcgtagcgtaagtgtgggctacctgctggtcaagcac
agccagaccgaccagacacccatgtgtccagtgggcatgtccaaactgtgggacggatac
agcctgctctacttcgagggccaggagaaagcccacaaccaagacctaggtctggcgggc
tcttgcgtcccacgcttcagcaccatgccgttcctctactgcaaccccaacgacctgtgc
cgctacgccgaccgcaacgacaagtccttctggctgtccaccacggcgcccatccccatg
atgcccgtggagggcgaggagatcaagccgtacatcagccgctgctcggtgtgcgaggcg
ccctccgtggccatcgccgtccacagccaggacgtcaccataccgcagtgccctgtgggc
tggcgcagtctgtggattggatactccttcctcatgcactctggcgcgggcaagcagggc
ggcgggcagctgctggtgtcgccagggtcttgcctggaggacttccgcagcacgcccttc
atcgagtgcaacggcgccaagggaacgtgccactacttcgccaacaagtacagcttctgg
ctggcgtccatggagcagaacttcaacagctcgccgggcagcgagacgctcaaggccggg
cagctactctcgcgcatcggccgctgccaggtgtgcatgaagaacctgtga
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