KEGG   Sardina pilchardus (sardine): 134078439
Entry
134078439         CDS       T10667                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil04382  Cornified envelope formation
spil04510  Focal adhesion
spil04512  ECM-receptor interaction
spil04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:spil00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134078439 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134078439 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134078439 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    134078439 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:spil04147]
    134078439 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:spil00536]
    134078439 (col4a1)
Exosome [BR:spil04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   134078439 (col4a1)
Glycosaminoglycan binding proteins [BR:spil00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134078439 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 134078439
NCBI-ProteinID: XP_062390375
LinkDB
Position
4:16934701..16990751
AA seq 1636 aa
MLLPSSILIVLAVISFNIEKTKAEGGCSGSSCGKCDCNGVKGQKGERGLPGLQGNMGFPG
MQGHEGPPGPMGPRGDNGESGSPGLKGTRGPPGLPGFPGNPGLPGIPGQDGPPGPPGIPG
CNGTKGEAGMHGIPGIAGLQGPPGIPGITGMKGDPGGIIGGIMPQKGEPGRSGQPGLPGA
NGFPGPPGSMGPQGPSGPRGHPGPPGPKGDKGDRLSFVSEKGQKGDPGLRGPPGPPGTTN
EQTKPDTGTSVQGPKGEKGDKGFCNIGVNGVKGEQGPPGPRGKPGKDGDSGYKGDSGYPG
TPGFDGRPGDKGERGPPGFGGDGPPGPAGPPGPPGPEGERGYPGLRGDSGLPGRNVEGPK
GERGLPGEIGQKGDRGADGQSLPGPDGLKGAPGPPGPPGPLSGICDVPRGNPGPPGNPGL
QGELGQKGDKGDTCVQCSAFGPPGLPGPAGPKGNQGYPGPAGSKGDKGLAGTPGRPGDTG
REGTPGLMGVPGAIGEPGDIYVAPGLKGDKGLPGREGSTGLPGLDGRPGRDGSPGVPGSK
GEPSLKGFKGDRGREGDPGLSGPPGPPGPPGVPGQGRPGEPGEKGSHGSPGVPGNPGVPG
PKGDPGKGVSSPGPQGAPGPRGVDGTPGIQGDRGPQGNPGLPGYQGVKGDPGQPGIGLPG
PHGAKGHSGTPGAPGIPGEPGRPGRDGNPGLPGFTGPKGEPGRGLPGPKGSMGPPGVSGF
PGTKGSMGPPGIPGIDGQTGPPGAQGVKGDGGPPGRPGQEGPPGPPGFGEPGRPGPMGPA
GDPGPFGQSGEKGEKGFPGAPGLDMPGPQGEKGTSGFPGQPGSKGLPGRSGPPGRDGFPG
SQGIKGDMGMIGTPGLPGKAGTPGTPGSPGPRGDPGVSGPRGDFGEAGPTGQKGEPGIAG
PPGNLTAGEMEHMKGEKGDIGDKGRVGQTGQLGHQGMPGDPGEPGKDGEAGLPGSPGEKG
DPGSIGEPGSTGEPGQTGGMGAMGLPGSLGPKGAKGVTGTTGHTGFKGTDGSKGDKGDAG
LPGIGVPGATGEKGASGLPGQSGPPGDKGEKGGEGYPGMPGSPGTKGDPGRIGYPGSPGQ
PGEKGVVGLPGSPGEPGLSGRPGEAGLQGPPGDKGDKGDPGKDGYPGSSGDRGDPGTPGT
GRPGNPGEFGSKGDKGSQGFPGTPGHPGVPGIKGDKGLAGDYGRPGQPGERGIPGPSMEG
PKGDRGTPGTAGAPGVTGTPGLPGVPGSLGAKGEKGDQGFTGPQGTQGYKGEKGPPGIPG
EPGLPGYGGIKGEMGIQGFPGFPGLKGEIGTGGFPGDLGDRGFPGPKGNDGPPGPPGPHT
LVKGDIGLPGLLGPSGPPGPQGYQGEKGLQGVTGAKGLKGDEGTPGYNGHPGAKGELGQT
GSTGPRGLPGPPGPDGVPGQVGPPGPSSMDHGFMVTRHSQSTDIPQCPYGTTLIFDGYSL
LYTQGNERAHGQDLGTAGSCLRKFSPMPFLFCNVNNVCNFAARNDYSYWLATPEPMPMSM
EPLTGQSIRPFISRCAVCEAPAMVMAVHSQTIMIPPCPNGWVSLWIGFSFVMHTGSGAEG
SGQALASPGSCLEDFRSAPFIECHGRGTCNYYSNAYSFWLATIEEDDMFRKPHSATLKAG
ELHTHVSRCQVCMKRT
NT seq 4911 nt   +upstreamnt  +downstreamnt
atgctgttgcccagcagcattctgattgttctggcggttatctccttcaatatagagaag
acgaaagcagaggggggatgttcaggatcctcatgtggaaaatgtgactgcaatggtgtc
aaagggcaaaagggcgagagaggactacctggcttgcaaggcaacatgggatttcctggg
atgcaggggcatgaaggccctcctgggcctatgggacctcggggtgataatggagagtct
ggatctccaggactcaaaggaacacgcggacctccaggattgccaggtttcccaggaaac
ccagggctaccgggcatcccaggacaggacggcccccctggacctcccggcatcccagga
tgcaacggaacaaagggagaggcggggatgcatggaatcccaggcattgcgggcctccag
ggtcctcctggtattcctggaattactggaatgaagggtgacccaggcggtatcattggc
ggtattatgcctcagaaaggtgaaccaggacgttcaggacagccagggctgcctggagcc
aacggattcccaggccccccaggttcaatgggtccccaaggaccatcaggacccaggggt
cacccaggtccacctggcccaaagggagacaagggtgacagactgtcttttgtgagcgag
aaaggccagaagggtgatcctgggctcagagggccaccgggcccaccgggcacgaccaac
gaacagaccaagcccgacaccggcacgagcgtccagggtcctaagggagaaaaaggcgat
aaaggtttttgtaacatcggtgtcaacggtgtaaaaggagaacaaggccctccaggacct
agaggaaaaccaggaaaagatggtgactctggttacaagggagattcaggataccctggc
acccctggatttgatggccgaccgggcgataaaggagagagaggaccacctggatttggt
ggtgatggtcccccaggccctgctggtccacctggccctcccggccctgaaggagagagg
gggtaccctggtctacgaggcgactctggactacctggcaggaatgttgaaggccctaag
ggtgagaggggtctccctggagagatcggacagaagggagacaggggcgcagacggacag
tcactccctgggccagacggtctaaaaggagctcctggcccaccgggcccacctggacct
ttaagtggcatttgcgatgtaccacgtggtaaccctggcccccctggaaatccaggactt
cagggagaattgggacagaaaggtgataaaggagacacctgtgtgcaatgctctgctttt
ggacctcctggattaccgggccctgccggaccaaagggaaatcaaggatatcctggccct
gctggttctaaaggagacaaaggtctggctggaacacctggtcgccctggtgacacaggt
cgcgagggtacccctggcctaatgggcgttcctggtgctatcggtgagcctggagacatc
tatgtggcccccgggctcaagggagacaagggcttacctggccgagagggaagcacaggt
ttgcctggcctggatggccgtccaggaagagatgggtcaccaggtgtacccggatccaaa
ggagaaccatctctaaaaggatttaaaggtgaccgtggtcgagagggtgatccaggtttg
tcaggacctccaggaccccccggacccccaggtgtcccagggcaaggccgcccaggtgaa
ccaggagagaagggtagccatgggtcaccaggtgtgccaggaaaccctggagtaccaggc
cctaaaggtgatcctggcaaaggcgtgagctcacctggcccacagggcgcacctggacca
cgaggagtggatggtacacctggcattcaaggtgacagaggacctcaaggtaaccctgga
ttgcctggatatcaaggagtgaagggtgatcctggccagcctggcattggacttcctggg
ccacatggggctaaaggacattcgggaacaccaggagcaccaggaattccaggagaacct
ggtcgtccaggacgggatggcaacccagggttaccagggtttactgggccgaagggtgag
ccaggacgtggtcttccagggcctaaaggatccatgggtccaccaggtgtttcaggcttt
ccaggaacgaagggaagcatgggtcctcctggtatcccaggcattgacggacagactggg
ccaccaggagctcagggtgtcaaaggtgatggtggacccccaggacgaccaggtcaagag
ggaccacctggacctccagggtttggagaacctggtagacctggccccatgggaccagct
ggagatcctgggccctttggtcagagtggtgagaaaggagagaagggattcccaggagcc
cccggtctggacatgccagggccccagggagagaagggcacgtctggcttcccaggacaa
ccaggctcaaaaggtttgccaggacggtctggtcccccgggacgagatggattccccggg
agccaaggtattaagggtgacatgggaatgattggcacgccagggttacccgggaaagca
ggaacaccaggaactccaggctcgcccggtcccagaggcgatcccggcgtcagtgggccg
aggggagactttggtgaggctgggcctacaggacagaaaggagaaccaggtattgccggc
ccgcccggcaaccttactgccggggagatggagcacatgaagggagagaagggcgatatt
ggagacaaaggtcgcgttggccaaactggacagttaggccaccaaggaatgccaggggac
cctggagaacctggaaaggatggagaggctggtttacctggaagcccaggtgagaaaggt
gatcctggctcgattggagagcctggaagcactggagagcctggacaaacagggggcatg
ggggctatgggattgccaggttcgcttgggccaaagggggccaaaggtgtgactggtact
actgggcacactggctttaaaggaacagacgggtcgaagggtgacaagggtgatgctggc
ctgccaggcatcggcgttcctggagctaccggagagaagggagccagtggcttgccagga
cagtcaggccctcctggtgacaaaggagagaagggtggtgagggatatccaggaatgccc
ggatcaccaggaacaaagggagacccaggacgaatcggatatccaggcagtccgggacag
cctggcgagaaaggtgttgttgggttgccagggtcacctggagaacctggactttcagga
cgaccaggagaagcaggtttacaaggtcccccaggggacaaaggtgacaaaggtgatcct
ggcaaggatggatatccggggtcctcaggagacagaggagatccaggtacaccaggtaca
ggccgcccaggtaacccaggagaatttggctccaaaggtgacaaaggcagtcaaggattt
ccaggaacacctggtcaccctggtgtccctggcatcaaaggtgataaaggacttgcaggt
gactatggcagaccaggacagccaggagagcgaggcattcctggaccctctatggagggg
cccaaaggagacaggggtaccccaggaacagcaggagcaccaggtgtcactggtactccg
ggtcttcccggtgtccctggaagtctgggggccaaaggagagaagggagaccagggattt
actggacctcagggaacacagggctacaaaggagagaagggtcctccaggaattcctggt
gagcctggtcttcctggttacggtggaattaaaggagagatgggcattcagggtttccct
ggtttcccaggccttaagggtgaaattggcactggcggttttccaggagacctcggagac
agaggattccctgggcccaaaggtaatgatgggcctccaggacctcctggccctcacacc
ttagtcaaaggggacatcggattacctggcctgctaggaccttcaggacctcctgggcct
caaggttaccaaggcgaaaagggacttcaaggtgtgactggtgcaaagggccttaaaggg
gacgaggggacacctgggtacaacggacatccaggcgccaaaggagagctgggtcaaact
ggatccacaggacccagaggattgcccggccccccgggtcctgatggcgtacctggtcag
gtgggcccccctggcccctcctccatggaccacggcttcatggtgacgcgtcacagccaa
tcgacggacatcccccagtgcccgtacggcacgacgctgatcttcgacggctactctctg
ctctacactcaaggcaacgagagagcccacgggcaggacctgggtactgctgggagttgc
ctgaggaagttcagccccatgcccttcctgttctgcaatgtgaacaacgtgtgcaacttc
gccgcccgtaacgactactcctactggctggccactcctgagcccatgcccatgagcatg
gagcccctcactggacagagcatcaggcccttcatcagcaggtgtgctgtgtgtgaggct
cctgccatggtgatggcagtgcacagtcagaccatcatgatccctccgtgcccgaacggc
tgggtctctctgtggatcggcttctctttcgtcatgcacactggctccggagctgagggc
tcgggtcaggccctggcctctcctggctcctgtttagaggacttccgctcggcgcccttc
atcgagtgccatggccgcggcacctgcaactactactccaacgcctacagcttctggctc
gccaccattgaggaagatgacatgtttaggaaacctcactccgcaacgctgaaggcagga
gagctgcacacacacgtcagcaggtgccaggtgtgcatgaagagaacataa

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