Sardina pilchardus (sardine): 134079825
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Entry
134079825 CDS
T10667
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134079825 (pcf11)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134079825 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134079825
NCBI-ProteinID:
XP_062391906
LinkDB
All DBs
Position
5:complement(1358694..1377548)
Genome browser
AA seq
1543 aa
AA seq
DB search
MSDDAAREDARREYQSSLEDLTFNSKPHINMLTILAEENLHFAKDIVAIIEAQIVKAPAA
EKLPVLYLVDSIVKNIGGEYLAVFAKNLVTSFICVFEKVEENTRKSLFKLRSTWDDIFPA
TKLYTLDVKVNSIDPAWPIKPLQNPSIHVNPKFLKQSEEAAPTPTPTPTPTPPPPPPKAV
TPQPLPSATEKKINEEQAIRQQLLAKQKELLELQQRKIELELEQAKVQLQSKGSLSGEGQ
ARQQLLAKQKELIELQQKRIELELEQIKVQLAFNRIGPTTTQAGSALHPTPTTTQPGAAP
PSNSWPAPPSEKATIRDPRLNRGGAPTLHGKESVSAHAKEPVSRREGQGLGGVPSVPEKR
GPPPGERHGKLMRIPRKEPATDDKTRPSKKDLAAAEERAKAKAASPARKEVLARSKLDPE
NLKASEGIRRDPRLRRHEKAEKAEAEEDVPKERKRGLDKKDKDEAGKMAEHQRLANTRSK
LSNGSLAKQEKPEFRIGKLSGKRSRSRSRSRSPSAPKRKERRSPKGIKGASASPPKFSKR
PAAAKHLHPEDLGHHGNAREDRAAPKNAEPRRPKRSHEERAAEQRDAYSAREPPETKENS
KRWRSGWEDKHPKHPDESPPSKPSTPRVKPWNPTQRSTPSRQRQNRLSVDANLHIPDVLN
SASKADLLKKASKRHAEGEITSEEFLNVAHQIRQLFQYQEEKQRTSCWDSSDDGQCPSKD
RKDTNTHPPMGNLSAEQLYLEHKSKLVRTRVQRQAERNRMLSALEDPEPLRRAMDDPQDL
FSRHEGPRKSDRSLPPSAHAARNSPSPGHLEEYPRHSPAPPYARSSPLAVEMQEDPAGEL
SPIPRFESPNSVHSDEGVEVDPPLLPPSRPGRGAAAGRMPSEPAGSAPLHLPDDGSAGAP
PSMPRHDSPAAAPRFDGHKGAPPYDGPPRSEAPPPRTHPQSAYEGNPGAKRYDGPPNPRF
DGHGRYEPNYGPRFDGPPQHDKRFEGAGRYDGPMPHRPMRFEGPHPQQGFGRFERPGGHN
RFEGPASGPGPSRFDGPMQPSRFEGPPRFSSPHLQQGPMSFPPHGSVGYDGPPSQPGPMR
FDGPGGNQPSGMCFENPTGPPGPIRFEGQPQGMPRLECPPPPGPPRYFAPQNQMRPQGQP
MFSLPQGPGPMVQQPANFSMTSRFPEPFGGNAQPFLGPQNVPQGPNFNVPQVPTSAGFPN
SFRPVGPYQGPPVGTLQQPMSLLSNLSQPFMPQNPVPFSQPNAQFGQPDNHLGQMDVNEL
LAKLLSNGIIKPATTDASQTESAAAPSSPGVVEEEEEEEQDDDDLPDLTSFSLDDMKQRY
DSVVTKLYTGIQCYSCGMRFTSSQTDIYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTD
WIEFEEIADLEERAKSQFFEKVYEEVVQKTQEAAKEKEFQSVKAAADVVDETCEICQEQF
ETYWEEDEEEWHLKDAIRVDDKTYHPSCYDDYKNTSSFGECTPSPNKVLTENPLNALVKQ
EEAEEPCRFSSVKQEPEAEGSDAQVAQENDVKVKLEECCFPPL
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgcagcgagggaagatgcccgtcgagaataccaatcatccctggaagat
ctgactttcaacagtaaaccacacatcaacatgctgaccatacttgcagaggagaatctt
cacttcgccaaggatatcgtcgcaataattgaagcacaaatcgtcaaggcgccagcagca
gagaagctccccgttttgtacttagtggattccatagtgaagaacattggcggcgaatac
cttgcagtgtttgctaaaaacctagtcacttcatttatttgtgtatttgaaaaggtggag
gagaacactagaaaaagcctcttcaagttgcgctcaacatgggatgacattttcccagca
acaaaactgtacacattagatgtgaaggtcaattcaatagaccctgcatggcccattaag
cctctacagaacccaagcattcatgtaaacccaaagtttcttaagcagagtgaggaagct
gctcctaccccgactccgactcctactcctactcctcctcctcctcctccaaaggccgtt
acaccacagcccctgccgtcagccaccgagaaaaagatcaatgaggagcaagccattagg
cagcagctgctggccaagcagaaggagttgcttgagcttcagcagaggaagatcgagctt
gagcttgagcaggccaaagtgcagctgcagtccaagggctctttgagtggagaaggacaa
gccaggcagcagctgctggcaaagcagaaggagttgattgagctgcagcagaagaggata
gaacttgagcttgagcagataaaagtgcaactggcttttaatcgtattggaccaaccacc
acccaggccggttctgccctccaccccacgcccactaccacccagcccggggccgccccc
ccctccaactcctggcccgcgccgccgtctgagaaggccacgatacgggatccacgcctg
aacagaggcggggcaccaactctacacggcaaagagtcggtgagcgcgcacgccaaggag
ccggtgagcaggagagagggccaggggctgggcggcgtgccgagcgtgcccgagaagaga
gggcctccgccgggggagaggcacggcaagctgatgcggatccctcgcaaggagccggcg
acggacgacaagacgcggcccagcaagaaggacttggctgctgccgaggagagagccaag
gccaaggccgcctccccggccaggaaagaggtcctcgcccggagcaaactcgaccccgag
aacctcaaggcctccgagggcatcaggagggacccccggctgcggcggcacgagaaggcg
gagaaggcggaggccgaggaggacgtgcccaaggagaggaagcgcggcctggacaagaag
gacaaggacgaggccggcaagatggcggagcaccagaggctggccaacaccaggagcaaa
ctctccaacggctcgctggccaagcaggagaagccggagttccggatcggcaagctgagc
ggcaagaggtcgcgctcaaggtcgcgctcccgctccccgtccgcgcccaagaggaaggag
cggcgctcgcccaagggcatcaagggcgcgtccgcgtcgccgcccaagttcagcaagaga
ccggccgcggccaaacacctgcaccctgaagacctcggtcaccacggcaacgccagagaa
gacagagccgctcccaagaacgcagaaccacgaaggcccaaacgttctcacgaagagaga
gctgcagaacagagagacgcctactccgcaagagaaccacccgagaccaaggagaacagc
aagaggtggaggagtggatgggaggacaaacatcctaaacatcccgatgagtctcccccc
tccaagcccagcaccccgcgggtgaagccctggaaccccacgcagagatctacgccgtcc
cgccagagacagaaccgcctgagcgtcgacgccaacctgcacatccccgacgtgcttaac
tccgcaagtaaagctgatctgctgaagaaggcgagcaagaggcacgcggagggggaaatc
accagcgaagagttcctcaatgtggcccaccaaatcagacagcttttccagtaccaagag
gaaaagcagagaactagttgttgggattcaagtgatgatggccagtgtccctccaaagac
agaaaagacacgaacacacaccccccgatgggtaatctatctgcagagcagttatacctt
gagcacaaatctaaactagtcagaacgcgagtgcagcgacaagcggaaagaaaccgaatg
ctgtctgctctcgaggacccagagccactccggcgcgccatggacgaccctcaggacctg
ttctccagacacgaggggccgaggaaaagcgaccgctccctgcccccctcggcccacgcg
gccaggaactcgccgagccccgggcatctggaggagtacccgcgccactcgcccgcgcca
ccctacgcccgctcctctccgctcgccgtggagatgcaggaggacccggcgggcgagctg
agccccatcccgcgcttcgagagccccaacagcgtccactctgacgagggcgtcgaggtg
gaccctccgctgctgcccccctctagacccggacgtggcgcggctgcgggccggatgccc
agtgaacccgccggctcggcgccgctgcatctcccggacgacggcagcgccggcgctcct
cccagcatgcctcgccacgacagccctgccgccgcaccgcgcttcgacggccacaagggg
gcgcctccgtacgacgggccgccgcgctcagaggcgccgccgcccagaacgcacccgcag
agcgcctacgaggggaaccccggcgccaagaggtacgacgggccccccaacccgcgcttc
gacggccacggccgatacgagcccaactacggcccgcgctttgatggcccgccgcagcac
gacaagcgctttgagggggcgggcagatatgacggacccatgcctcaccggccaatgagg
ttcgaggggccccacccccagcagggcttcggccggttcgagcggcccggcggtcataac
cggttcgagggccccgcgtcgggccccggtcccagccgcttcgacgggcccatgcagccc
agccgctttgaggggccgccacgcttcagcagcccccacctgcagcagggccccatgagc
ttccccccccacggcagcgtgggatacgacgggccccccagccagcccgggcccatgcgc
ttcgacggccccggcggcaaccagccctccggaatgtgctttgagaaccctaccggcccg
cccggaccaatccggttcgaggggcagccccaggggatgcccagactggagtgcccccca
ccgccgggccccccccgatacttcgccccccagaaccagatgcggccgcagggccagccc
atgttcagcctgccgcagggccccgggccgatggtgcagcagcccgccaacttcagcatg
accagccgcttcccagagcccttcggcgggaacgcccagccgttcctgggcccgcagaac
gttcctcaaggaccaaacttcaacgtgccacaagtccccacctccgcagggttccccaac
tccttcaggcccgtgggcccctaccagggacctcccgtgggaaccctgcagcagcctatg
agcctgctgtccaacctcagtcagccattcatgccacagaacccagtgcctttcagtcaa
ccaaatgctcagtttgggcagccagacaaccacctgggccagatggacgtaaacgagctg
ctggccaaactcctctccaacggcatcatcaagcccgccaccacagacgcatctcagaca
gaatctgctgcagcgccttcatctccgggagtggtggaggaagaggaggaagaggagcag
gatgacgacgacctcccagacctgacgagcttctcgctggacgacatgaagcagaggtac
gatagtgtggtgaccaagctgtacacgggcatccagtgctactcgtgtggcatgcgcttc
acgtcgtcgcagacggacatctacgccgaccacctggactggcactaccggcagaaccgc
tccgagaaggacatcagcaagaaggtcacgcaccggaggtggtactacagcctcacggac
tggatcgagtttgaggagattgcggacctggaggagcgggccaagagccagttctttgag
aaggtgtacgaggaggtcgtgcagaagactcaggaggcggccaaggagaaggagttccag
agtgtgaaagctgcagctgatgtggttgatgagacttgtgagatctgccaggagcagttt
gagacgtactgggaggaggatgaagaggagtggcatctgaaagacgcaatcagagttgat
gacaagacatatcatccatcatgttacgacgactacaaaaatacgtcttcgttcggggag
tgtactccttcccccaacaaggtgctaacagagaaccccttaaatgctctggttaagcaa
gaggaggccgaggagccgtgccggttcagcagtgttaagcaggagcccgaggccgagggc
tcagacgctcaggtggcgcaggagaatgacgtaaaggttaagttggaagaatgctgcttc
ccccctctctga
DBGET
integrated database retrieval system
