Sardina pilchardus (sardine): 134079958
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Entry
134079958 CDS
T10667
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04270
Vascular smooth muscle contraction
spil04625
C-type lectin receptor signaling pathway
spil04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
134079958 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
134079958 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
134079958 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134079958 (arhgef12b)
Membrane trafficking [BR:
spil04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
134079958 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
134079958
NCBI-ProteinID:
XP_062392107
LinkDB
All DBs
Position
5:complement(5930053..5982601)
Genome browser
AA seq
1489 aa
AA seq
DB search
MSGTQSTITDRFPKKTTRTGSILGKDHPPDKKSKSDKPAVSSSNEFDPTEAPVLNSSLSS
SSSSSSCVVADAKPESCGLVQRCVIIQRDENGFGLTVSGDNPVFVQLVKDDGAAMRAGVQ
TGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSEGEGDSGSLSLS
SPHSPGPTTGERSSTSSSPSDRVTSPLPAWEENSTAYHQKVDILHLQKMLTKQQQSYQAM
KEECSRNPSPKLLKMIQEAEKHITLLQGQLSKATAAGQDGGVSSQLSEADVDDVGGGESE
QPLSWATDSAPDGSWPNSTALPASPYPNAALPDSPCQRQTPCHSPKTTCRGSVNSCPSPD
TEDLPELDSQSSLGSPMSRQPPQIIGAEDDDFDAEQDQINGQCSCFQSMELLKSRPAHLA
AFLHHVVSQFDPAPLLCYLYADLSKQNNPKETRRIFTDLHTYFMDRTANLKVAVPESISA
ELEKRRAEVLPEETHRQYVQLLQDTLLTDIQKNLEDFRQKRSMGLTLAEADLARLDAETG
RSRVALERERSCAEHIISKIEEVLLTSQPTEEEKCSTMQYVILTYMKHLGVKVKEPRGLE
PKPKRINFNLPKIKVKGIKPEKPEREGGEEKKKGRFPPFLPPRRPTRVDPSSIGKAVELN
KQRTQKQLSQPALSTADQSDSSSPLSAPAGLRFRSNQSSDGSDPTHGGAIMSSPPHSAPA
AQGSDGTGRDADTGSTPSSAQARLGDGFHPSDPQDGSTPGSATHFDFGPCALEHLQEEEP
ETDRTQDGGTPKPARRMDPLGSGEVHSEDDQGGEVELEQDPSNWQMSVPREILQGLASQE
IKRQEVIYELFYTERTHLRMLRVLDNVFYQKLSRESILPPGDVKHIFTNLEEIVQLHASI
LEQMMSTRKKNESSVISLIGDDLLTWFSGTEEEKIKQAVGTFCSNQPFALELIKSRQKKD
QRFTSFMQEAESNQLCRRLQLKDIIPMEMMRLTKYPLLLENIARNTEDLEEKDKVKRAAE
CCRNILNHVNQAVKEAENKQRLEDYQRRLDLSSFKQSENPMILEFKNLDLTKRKLVHEGP
LSWKVNKDKTIELYTLLLEDILVLLQRQDERLILKCHSKNLAGTADTKHIFSPIIKLNTV
LVRSVATDNKSFFVLSMSDSGAQIYELMAQTVSEQRTWQCLITQRADSMKMKQHNIIPLP
QTDGDRETVEMINSAGVQKLNKDPDRISTGSIQSPEKDLVSTQGVLDTPPPGSNPFESSK
SEDEEEEEESLTVRLEEEGPFLEADLADKEAFVKPGSCPPVVLDDEEPEAFGFPSSRADE
ALKTLAALRQLLITHMSAEEGERAEGGGERANTSAPPLPRPRDNGGPAPPAENNSERTAP
SQAATESPSANTALFETAEYALLLEGYGGFEESSTDDDIQGGDSDVDVTKLLSSSQTTGV
PNLSRQVMTHIRLLQANLQHLKEVEIKYHELRQSLAEAATDTVDSKDKS
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcacacagtccacgataactgacaggtttcccaaaaaaactaccaggacagga
agtattctcggcaaggaccatcccccagacaagaagtccaagagcgacaagccagctgtc
tcctcctccaatgagtttgatcccacagaggcgcccgtgctgaacagcagcctcagcagc
agtagcagcagcagcagctgtgttgtagccgacgcaaagccagagtcctgtgggctcgtt
cagcgttgtgtcatcattcagagagatgagaatggcttcggcctgaccgtcagcggagac
aaccccgtgtttgtgcagctcgtcaaagacgatggagctgccatgcgagctggtgttcag
acaggagaccggatcataaaggtcaatggaacattagtaacacattcaaaccatgtggaa
gttgttaagttgataaaatcgggctcctatgtggccctcacggtgctcggccggccccca
gggctgcctcagatcccactgtccgagggcgagggagactcggggtccctctccctgtcc
tccccgcactcccctggccccaccacaggggagcgctcctccacctcctccagcccctcc
gaccgcgtcacctccccccttcctgcctgggaggagaacagcacagcgtaccatcagaag
gtggatatcctgcacctgcagaagatgctgacgaaacagcagcagagttaccaggccatg
aaggaggagtgcagcaggaacccctctcccaaactactgaagatgatccaggaagccgag
aagcacattacactgctccagggacagctgagcaaggctacagcagctggacaggatggc
ggcgtatcatctcagctgtcggaggctgacgtggatgacgtgggcggtggtgagagtgag
cagccgctgtcctgggccactgactccgccccagacggctcctggcccaacagcaccgcg
cttcctgcctctccgtacccaaacgctgccctcccagatagtccgtgccaaagacagacc
ccctgccacagcccaaagaccacttgccgcggcagcgtgaactcctgcccctcgcccgac
acggaggacctgccagagctggactcccagtccagtctcggcagccccatgtcacgccaa
ccccctcagatcatcggcgccgaggacgacgacttcgatgctgaacaggaccagatcaat
ggccagtgcagctgttttcagagcatggagctcctgaagtctcgaccggcgcacctggct
gccttcctccatcacgtggtctcccagttcgaccctgcgccactgctgtgctacctctat
gctgacctgtccaagcagaacaaccccaaagagacacgacggatcttcacagacctgcac
acttatttcatggaccgaacagccaacctaaaggtagcggtgcctgagtccatctctgct
gaacttgaaaaaaggagagcagaagtgctcccagaggagactcacaggcagtacgtgcag
ctgcttcaggacaccctcctgacggacattcagaagaacctggaagacttcaggcagaag
cgcagtatgggcctgacgctggccgaggctgatctggcgcggctggatgcggagacgggg
aggagtcgcgtggcgctggagagggagcgctcctgtgcagaacacatcatctccaagata
gaggaagtgctattgacgtcacagcccacagaggaagagaagtgcagcacgatgcagtac
gtgatcctcacctacatgaagcacctgggggtgaaggtcaaggagccgcgaggcctcgaa
cccaaacccaagcgcatcaacttcaacctgcccaagatcaaagtgaaaggcatcaagcca
gagaagccagagagggaaggtggtgaagaaaagaagaaaggcaggttcccccctttcctg
cctcccaggcggcccactcgcgtcgacccatcctcaatcggcaaagccgtggagctgaac
aagcagcgtacacagaagcagctgtcgcagccggccctcagcaccgctgaccagtccgac
tcgtcttcgccgttgtcggcaccggcggggttgcgtttccgtagcaaccagtccagcgac
ggctcggacccgacgcacggcggcgccatcatgagctcgccgccacacagcgcccccgcc
gcacagggctccgacggaaccggccgcgacgccgacacgggctccaccccctcctcggcc
caggcccggctcggggacggcttccaccccagcgacccccaggacggatccacgccgggc
tccgccacccactttgactttggcccctgcgccctggagcacctgcaggaggaggagccg
gagacggacaggacccaggacggaggcacgccgaagccggccaggaggatggatccgctg
ggctcgggcgaggtccatagcgaggatgaccagggtggcgaggtggagctggagcaggac
ccctccaactggcagatgtcagtcccccgagagatcctgcaggggctcgcgtctcaggaa
atcaagcggcaagaagtcatttatgagctgttctacacagagaggactcacctgcggatg
ctgcgggtccttgacaacgtcttctatcagaagctgagcagagaaagcatcctccctcca
ggcgacgtcaagcacatcttcaccaacctagaggagatcgtccaactacacgcctccata
ctagaacagatgatgtccacccggaaaaagaatgaaagttcagtcatcagtttgatagga
gatgatctgctcacatggttcagtggaacggaggaggagaagatcaagcaggcggtgggc
accttctgcagtaatcagccctttgcgctggagctcatcaaaagcaggcagaagaaggac
cagcgcttcacctcctttatgcaggaggccgagagtaaccagctgtgccgccggctccag
ctcaaagacatcatccccatggagatgatgcgcctcaccaagtatcctctgctgctggag
aacatcgccagaaacaccgaggacctggaggagaaggacaaagtcaagagagccgccgag
tgctgcaggaacatcctgaaccacgtcaaccaggcggtgaaggaggccgagaacaaacag
agactggaggactaccagagacggctggacttgtcctcgttcaagcagagtgagaatccc
atgatcttggagttcaagaatctggacttgaccaagaggaagttggtgcacgaagggcca
ctgtcatggaaggtcaacaaagacaagacaatagagctgtacacgctgctgctggaggac
atcctggtgctgctgcagaggcaggacgagcgcctcatcctcaagtgccacagcaagaac
ctggccggcaccgccgacaccaagcacatcttcagccccatcatcaagctcaacaccgtt
ctggtgcgctccgtggccacagacaacaagtccttcttcgtattgtccatgtcggacagc
ggtgcccagatctatgagctgatggcgcagactgtgtctgagcagagaacgtggcagtgt
ctcatcacccagagggcagactccatgaagatgaagcagcacaacatcatacctctaccc
cagaccgacggtgaccgtgagactgtggagatgatcaactccgctggcgttcagaaactc
aacaaagatcccgaccgcatctcgaccggaagcatccagtcccccgaaaaggacttagtg
tccacccagggggttctggacacgcctcctccggggtccaacccctttgagagcagcaag
tcagaggatgaggaggaggaagaggagtcgctaacggtgcgactggaggaagaggggccc
ttcctagaagccgacttagcagacaaagaggccttcgtcaagcccgggtcatgtccgccg
gttgttctggacgatgaggagccggaggcctttggctttccctcctccagagctgacgaa
gccctaaaaacattggcagcgctgcggcagcttctcatcacccacatgagtgctgaggag
ggggagcgggccgaggggggaggcgagcgcgccaacacgtccgcacctcctctgccgagg
cccagagacaacgggggcccggcaccacccgcagagaacaactcggagaggacggcgccc
tcgcaagccgccacggagtcgccgtctgccaacacagcgctgtttgagacggccgaatac
gctcttctcctagaaggatacggagggtttgaggagagcagcactgacgatgacatccag
gggggcgactcggatgttgacgtgacgaagctcctctcatcgtcacagacaacaggcgta
cccaacctcagccggcaggtcatgacccacatacgcctgctacaggccaacctgcaacac
ctcaaggaggtggagataaagtatcatgaacttcgccaaagcctcgccgaagcagctact
gacacagtggatagcaaagacaagagttag
DBGET
integrated database retrieval system
