Sardina pilchardus (sardine): 134080385
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Entry
134080385 CDS
T10667
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134080385 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134080385 (rbm22)
Spliceosome [BR:
spil03041
]
Complex B
Other components
Prp19-related factors
134080385 (rbm22)
Complex C
134080385 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
RRM_occluded
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
zf-CCCH_4
RRM_YTH1
RRM_3
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
134080385
NCBI-ProteinID:
XP_062392785
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All DBs
Position
5:complement(18870521..18879379)
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AA seq
428 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDDVPKSDVNKEYYTQN
MEREIANSDGTRAVGTLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASSMPRLDTPEDKSITTLYVGGLG
DTITDSELRNHFYQFGEIRTITVVPRQQCAFIQFATRGAAESAAEKSFNKLIIHGRRLNV
KWGRSQGSRGKEREKDGMPESGMRLEPVPGLPGALPLPPPPVSEEEGSANYFNLGPSSAP
VVMNMGLPPPPGVSMPPPPGFGPPMFPSMDGMGPPMPPPMPMRLPGQVHYPSQDPQRMGA
HAARHGGT
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtctctaggagctaacacgtacaacaggcaaaattgggaggacgcggatttt
ccaattctttgccaaacatgtttaggagagaatccttacattcgcatgaccaaagagaag
tatgggaaggagtgcaaaatttgtgcccgtcccttcactgtgttccgctggtgtcctggt
gtgcggatgcgcttcaagaagaccgaggtttgtcagacgtgcagcaaaatgaagaacgtc
tgccagacctgcttgctggaccttgaatatggtttgcccattcaggtccgtgacacaggc
ctttcggtcaaagatgacgtgccgaagtcggatgtgaacaaagaatactacactcagaat
atggagagagagattgccaactctgacgggactagggcagtgggtacacttggtaaggct
ccgagttccagtgacatgctcctgaagctggcccgcaccacgccctactacaagaggaac
aggccacacatctgctctttctgggtgaagggagagtgcaagagaggagaggagtgtcca
tacagacatgagaagccaactgatccagacgaccctctggctgaccagaacatcaaggac
cgttactatggcatcaatgatccggttgctgacaaactgttgaagagggcgtcttccatg
ccgagactggatactcccgaagacaagtccatcaccactctttatgtgggaggcctagga
gacaccatcactgactcagaactcaggaaccacttctatcagtttggggagattcgcacc
atcacagtcgtccccaggcagcagtgcgctttcatacagtttgctacgcgtggggctgct
gagtctgctgcggagaaatcctttaacaagctcatcattcacggccgcagactcaacgtc
aaatggggcaggtcccagggatctcgaggaaaggagagggaaaaagacggaatgcctgaa
agcggcatgcgactggaaccagtgcctggacttcctggagcgctgccgctgcctccacct
cctgtgtcagaagaggagggctcagccaattacttcaacctgggccccagcagtgctcct
gtggtgatgaacatgggactgccgcctccaccaggggtctccatgcctccacctccaggc
tttggtcctccaatgttcccctctatggatgggatgggtccgcccatgcccccccccatg
cccatgaggctgcccggtcaggtccattacccttcccaggatcctcagcgcatgggcgcc
catgctgctcgccacggaggcacatga
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