Sardina pilchardus (sardine): 134080558
Help
Entry
134080558 CDS
T10667
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134080558 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134080558 (ddx46)
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134080558 (ddx46)
Spliceosome [BR:
spil03041
]
Complex A
U2 snRNP components
U2 related factors
134080558 (ddx46)
Complex B
134080558 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
NifU_N
Motif
Other DBs
NCBI-GeneID:
134080558
NCBI-ProteinID:
XP_062393052
LinkDB
All DBs
Position
5:26234354..26248057
Genome browser
AA seq
1056 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSNSRSPDKRSKKDERAGSRNRDRNRRERSRSRDRRRSRS
RDRKRPRRSRSRERRRSRSRDRRRSRSRSRSRGRRSRTPSPSKSRKTEDSKEKSSNGDPA
NEKKKVKEEKEEEKVEDQDFDHNTLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEE
MKQGKKWSLEDDDDDDEEAPAPLEQEEEEEEEKPEEKEEEEEKTTDMEEEPGEEIDSLDA
YMEEVKEEVKKFNMGTMRGKNDKKGGMVTKVVTVVKTKKMPHTTKKKGELMENDQDAMEY
SSEEEEVDLQTALTGFQTKQRKVLEPVDHQKIQYEPYRKNFYVEVPELAKMTPEEVNVFR
LELEGIAVKGKGCPKPIKTWVQCGTSMKVLNALKRQSYEKPTPIQCQAIPAIMSGRDMIG
IAKTGSGKTIAFLLPMFRHIMDQRPLDEAEGPLAVIMTPTRELALQITKECKKFSKPLGL
NVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRM
FDMGFEPQVMRIVDNIRPDRQTVMFSATFPRAMEALARRILTKPIEVQVGGRSVVCSDVE
QHVIVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLRDLMKASYPCMSLHGGID
QYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRVGRTGRAG
NKGYAYTFITEEQARYSGDILKALELSGSTVPPELERLWASFKDQLKAEGKVAKSSSGFS
GKGFKFDETEQALANERKKLQKAALGLQDSDDEDAALDIDEQIESMFNSKKRVKDLSAPG
GGASAAVASNAAAAASVSSLTGLAMPSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQ
ATNAILRGGTIIAPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAESITRYEEE
LEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESASE
LAVQKAKAEITRLIKEELIRLQNSYQPQNKGRYKVL
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgggtagagagtcaaggcattacaggaagcgttcggcatcaagaggtcggtcgggaagc
cgatcgaacagccgctctcccgacaaacgctcaaagaaagatgagcgagctggttccaga
aaccgagaccgcaacaggagagagagatctcgcagcagagaccgccgtaggtcacggtct
agagataggaaacgccctcgccgatccaggagtcgggagagacgtagatcaaggagcagg
gatcggaggaggtccaggagtaggagcaggagtcgaggacggcggtcacgaactccaagt
cctagcaaaagcagaaaaactgaagacagcaaagaaaaatcaagcaatggagatccagca
aacgaaaagaaaaaagtaaaggaagaaaaagaggaagaaaaagtcgaagatcaagacttt
gatcacaacacactggaggaagaaatgaggaaaagaaaagaacgtgttgagaaatggcgt
gaggagcagaggaagaaagccatcgagaatattggggagatcaagaaggaactcgaggag
atgaagcaggggaagaagtggagtctggaggatgatgatgatgatgatgaagaggcccca
gcacctctggagcaggaggaggaggaggaagaggagaagccagaagagaaagaggaggaa
gaggagaagaccactgacatggaagaggagcctggcgaggaaatcgactccctcgacgcc
tacatggaggaggtgaaggaagaagtaaagaagttcaacatgggcaccatgaggggcaag
aacgacaagaagggtggcatggtgaccaaagtggtaaccgtggtaaagacaaagaagatg
cctcacacaaccaagaagaaaggggagctgatggagaacgaccaggatgcaatggagtac
tcctcagaggaagaggaagtggatctgcagactgctctgactggcttccaaacaaaacag
aggaaagtgctggaacctgtggatcaccagaagatccagtatgagccgtaccgcaagaat
ttctatgtggaggttccagaattggccaaaatgacacccgaagaggtgaatgttttccgt
ctggaactggagggaatcgccgtgaagggaaagggctgcccgaagcccatcaagacctgg
gtgcagtgcggaacctctatgaaggtcttaaatgctttaaagaggcaaagctatgagaag
cccacacccattcagtgtcaggccattccggccatcatgtcgggtcgagacatgatcggc
atcgccaagactggcagtgggaaaaccattgctttcctcctccccatgtttcgccacatc
atggatcagaggcccttagacgaggcagaggggccccttgctgtgatcatgacccctaca
cgagagctggctctgcagatcaccaaagagtgcaagaagttctccaagcccctgggtctg
aatgtggtgtgtgtctatggaggcacaggcatcagtgagcagattgctgagcttaagaga
ggagcagagatcatcgtctgtactccagggaggatgattgacatgctcggtgccaacagc
ggccgagtcactaacttgcgcagggtcacatatgtggttgttgacgaagctgacagaatg
ttcgacatgggctttgaaccacaggtcatgcgaattgtggataacattcgacccgatcgg
cagacggtcatgttctcggccacgttcccccgcgctatggaagctctggccaggcggatc
ctgaccaagcccatcgaggtgcaggtgggaggcaggagcgtcgtgtgctcagacgtagag
cagcatgtgattgtgattgaggaagacaaaaaatttctgaagttgttagagatcctgggc
cactaccaggaaaagggttctgtcatcatctttgtggacaagcaggagcacgcagacggt
ctcctcagagacttgatgaaggcctcttatccctgcatgtctctgcatggaggcatcgat
cagtacgaccgagacagcatcattaatgacttcaagaacggcgcgtgtagacttatggtg
gccacgtctgtggcggcccgggggctggacgtcaagcagctgatcttggtcgtcaactac
aactgcccaaaccactacgaggactacgtccacagagtgggacgcactgggcgggctggg
aacaaaggttacgcatacacattcatcacagaggagcaagcccgttactcaggagatatc
ctcaaggctctggaactttccggatcgactgtgccgcctgagctagagaggttgtgggcc
agtttcaaagaccaactgaaagccgaaggaaaggtcgccaagagcagcagtggcttctct
ggaaagggcttcaagtttgacgagaccgagcaggctctggccaacgagcgcaagaagctg
cagaaagcagctctgggtctgcaggactccgacgatgaggacgcagcactggacattgac
gagcagatcgagagcatgttcaactcgaagaagcgagtgaaggacctctctgcccccgga
ggaggtgcaagtgccgccgtggccagcaacgcagcagccgccgccagcgtgagcagcctg
accggccttgccatgccctcggctggaaacatccagaagctggagatcgccaagaagctg
gctctgaagatcaacgcccagaagaaccttggggcagaggctcaggatgtgatgcagcag
gccaccaatgccatcttgagagggggcaccatcattgccccgtcggtctcggcgaagacg
atcgcagagcagctggctgaaaagatcaacgccaaactcaactacacccccgtggagaag
ctggaggaggagcggcaggcggccgagcaggccgagagcatcacgagatacgaagaggag
cttgagatcaacgacttccctcagacggcgaggtggaaggtgacgtccaaagaggctctg
cagaggatcggcgagtactccgaggcagccatcaccatccgagggacgtacttccctcct
ggaaaggagcccaaagaaggggagcgcaagatctacctggccatcgagagtgccagtgaa
ctggctgtgcagaaggctaaagcagagatcactaggctgattaaagaagagcttattcga
ctgcaaaactcctaccagccacaaaacaaaggaagatacaaggtcctctag
DBGET
integrated database retrieval system
