Sardina pilchardus (sardine): 134080797 Help Entry 134080797         CDS       T10667                                  Symbol pcdh1a Name (RefSeq) protocadherin-1   KO K16498   protocadherin delta 1 Organism spil  Sardina pilchardus (sardine) Pathway spil03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:spil00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     134080797 (pcdh1a)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:spil01009]     134080797 (pcdh1a)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:spil04515]     134080797 (pcdh1a) Protein phosphatases and associated proteins [BR:spil01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      134080797 (pcdh1a) Cell adhesion molecules [BR:spil04515]  Cadherins   Protocadherins    134080797 (pcdh1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_CELSR2_9th Cadherin_2 Motif Other DBs NCBI-GeneID:  134080797 NCBI-ProteinID:  XP_062393391 LinkDB All DBs Position 5:complement(20617592..20683464) Genome browser AA seq 1225 aa AA seqDB search MLYSGSQARVWLYKTSMDFPLRALLLWVLLLDPRGMPLVGGVLYRVPEEQPPSTLIGSLA SDQGLPDSGHLYKLEVGSPYLRVDGKTGDIFTTEIPIDRETLKNCRNKGKPCFLEFEVSV TDLIQNQSPRLIEGRIEVLDINDNTPQFPSPVLTLSIPENTPSGVLFPIPLATDRDTEKN GVLDYKLSAESESSSLFSLQVAEDRGEKLPQLIVLGSLDREQKDSYDLSIKVLDGGSPQR QSSALLRVVVTDANDNAPRFEKSLYEAKVAENSPIGHSVLQVKANDSDLGPNGEIEYTLH QATDPVPKLLRIDRSTGIIYVKGGLDREEINSLKFYVVARDKGPTPKSSKTFVEIEVTDQ NDNAPAVEIRGIGLVTHSDGVANISEDMPVGTAVALVQVSDQDEEENAVVTCVVAGDVPF QLRLASDSAAEHKKKYFLQTTTPLDYEDIREYRVQIVAVDSGNPALSSTNSLKVQVTDIN DNSPIFSPSLFEVDFKEENQPGEKILDVVAKDADSGTNAELTYRIVAEPSISGLFEIDAI TGTVRARSPLDREHKEKYEFQVVAADKGVPSHSGTATVVVKVLDRNDNEPKFMLNRYTFS VMENMPPLSPVGMVTVMDMDKGENAHVHLSVEPDVGKFIVQNGTGTILSSISFDREKESS YTFRLKAVDGGDPPRSSYVGVVINVLDENDNAPIVIKPSNSSFRRLSPLAAPDSRVEVVE AEDMDTGPNAELVYSITGGNPHELFRISPSDGEITLAKELTRKHSGLHRLVVRVSDRGKP TRHTTALVHIYVNETIANVSLVEALVGHSLYTPLDMDIAGDPDFDPAHRSNILYGSLAGV AGVLLVIVVVVFIRHRIQRETKSGYQAGKKETKDLYTPKQGPKSSKGKKGRKGKPPKSPK PLGEEEEVSLQKSLKFNLDGVSDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSP SASQKHQAVQELPATNTFVGTGGDDNSTGSDQYSDYSYKANQAKYSTKTLPHRRVTFSTT NPVQDLQDSSQQSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHP ENDIRSLPDVAMTGNCTQECSELGHSDACWMPGQPSPIRKTPRNPPKLSTFVPYQERGSL GRLANGSARLGGGGGGGGGGSGGSGVEEPRPRLPPSRSAYSSGVGVGGHAPSQDCPLEEV PLSVASEYPPTSPPSSHTSKREIYL NT seq 3678 nt NT seq  +upstreamnt  +downstreamnt atgctgtactctggatcccaagctagggtgtggctgtacaagacctccatggattttcct ctgagagcgctcctactgtgggtccttctgctggacccccgcggcatgccactggtggga ggagtcttgtaccgggttcccgaggagcagcctcccagcacgttaattggaagcctggca tcggaccaaggcctgccagacagcgggcacctgtacaagctggaggttggctctccctac ctgcgggtcgatggcaagacaggggacatcttcaccaccgagatccccatcgaccgcgag accctgaagaactgccggaacaagggcaagccttgcttcctggagttcgaggtgtccgtc actgacctgatccagaaccagagcccccggctgatcgagggccgcatcgaggtgctggac attaacgacaacacgccgcagttcccgtcgcccgtcctcaccctgtccatcccggaaaac actccgagcggggtgctcttccccatcccgctggccaccgaccgagacacggagaagaac ggggtgctggactacaagctgtccgccgagtcggagtcctcgtcgctcttcagcctgcag gtagccgaggaccgcggcgagaagttgccccagctgatcgtgctgggaagcctcgaccgc gagcagaaggactcgtacgacctcagcatcaaagtgctggacgggggatcccctcaacgc cagagcagtgccttgctgagagtcgtcgtcaccgatgcgaatgacaatgcgcccagattc gagaaatcgctgtacgaggctaaagttgccgaaaacagtcccatcggacactcggtgctt caggttaaagctaatgactctgaccttggccctaatggggagattgagtacactcttcac caggctactgaccctgtccccaagctcttgaggatcgaccgttccactggtatcatctat gtgaaagggggactggatcgcgaagagatcaacagcttaaagttttatgtggttgcacgg gataaaggaccaacacccaagtcgtccaaaacttttgtcgagatcgaagtgacggatcag aacgacaatgcccccgccgtggagatccgtggaattggcctggtcactcacagtgatggc gtcgcaaatatatccgaggacatgccagtggggacggccgttgccttagtccaagtctca gatcaggatgaagaggagaatgcagtagtgacttgtgtcgtcgcaggggatgtcccattc cagctgcgcttagcaagtgactctgccgccgagcacaaaaaaaagtatttcctgcagacc acgaccccccttgactacgaggacattcgagaatatagggtccagattgtcgctgtggac tcgggtaaccctgcactgtccagcacaaactcgctgaaggtgcaagtgacagatatcaat gacaactcccccatcttttcgccctcgctcttcgaggttgacttcaaagaggaaaaccag cccggagagaagattctcgatgtggtcgccaaagacgctgacagcggcaccaacgcggag ctcacttacagaatagttgctgagccctctataagcggtctcttcgaaattgatgctatc acaggcacagtgcgagcgcgcagtcccctggacagagagcacaaggagaagtacgagttc caggtcgtcgcggccgacaaaggggtgcccagccacagcggcacggccacggtcgtggtc aaggtgctcgatcgcaacgacaacgagcccaagttcatgctgaatcggtacactttctcg gtaatggagaacatgcctcctcttagtccagtgggcatggtgaccgtcatggacatggac aaaggagaaaacgctcacgtgcacctctcagtggagccggacgtcgggaagtttatcgtc caaaacggcacgggaacgatactgtccagcatatccttcgatcgagagaaggagagcagc tacacgtttcgcctgaaagcggtagacggcggcgatcctcccaggtcgtcctacgtgggc gtggtgatcaacgtcctggacgagaacgacaacgcgccgatcgtcatcaagccctcaaac tcgtccttcaggcgcctgtccccgttggccgccccggacagccgcgtggaggtggtggag gccgaggacatggacaccggacccaacgcggagctcgtgtacagcatcaccgggggcaac cctcacgagctcttccgcatatcgccgtccgacggcgagatcacgctggccaaggaactg acccgcaagcacagcggcctgcatcgcctcgtggtccgagtgagcgaccgggggaaaccg acgcgccacaccaccgccctcgtgcacatctacgtcaacgaaaccatcgccaacgtcagc ctggtggaggcgctggtcggacacagcctctacaccccactggacatggacatcgccggt gaccctgactttgaccctgctcataggagcaatatcctctatgggagcctggctggtgtg gcgggcgtcctcctggtgatcgtggtggtggtgttcatccgtcaccgcattcagagggag accaagagcggctaccaggccggcaagaaggagaccaaggacctctacacgcccaagcag ggccccaagagcagcaaaggcaagaaggggaggaaagggaagccgccaaagtctcccaag cccctcggggaagaggaagaggtcagtctccagaaaagcctcaagttcaacctggacggt gtcagcgatagccccaggatacacctccccctgacatacccgcccggcagccccgacctg ggccgtcattaccgctccaactcgccacttccctccattcagctccaggctcagtcgccg tcagcctcccagaagcaccaggctgtgcaggagctcccagccaccaacacctttgtggga acaggcggagatgacaactccaccggttcggatcagtactcggattacagctacaaggcc aaccaagccaagtacagcaccaaaacgcttccccatcgccgagtgactttctccacgacc aatcccgtgcaggatctgcaggactcctcccaacagagttactatgacagcggcctggag gagtcggagacgcccagcagcaagagctcgtctgggccccgcatcggacccctggccctg cccgaggaccactacgagaggaccacccccgacggcagcatcggggagatggagcacccg gaaaacgacatccgctccctgccagacgtggctatgacgggcaactgcacccaggagtgc agcgagctcggccactcggacgcctgctggatgcccgggcagccctcgcccatccgcaag acgccgcgcaacccgcccaagctctccacctttgtgccttaccaggagagggggagcctg gggcgcctggccaacggcagcgcccggctgggtggaggcggcggtggtggcggcggtggc agcgggggcagtggcgtggaggagccccggcctcgcctccctccctcccgcagtgcctac tccagcggggtgggcgtcggaggccacgcccccagccaggactgccccttggaggaggtg ccgctgagcgtggccagcgaatacccgcccaccagcccgccttccagccacacctccaag cgggaaatctacctgtga

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