Sardina pilchardus (sardine): 134082001
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Entry
134082001 CDS
T10667
Symbol
irx1a
Name
(RefSeq) iroquois-class homeodomain protein IRX-1a
KO
K24889
iroquois-class homeodomain protein IRX
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spil03000
]
134082001 (irx1a)
Transcription factors [BR:
spil03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
134082001 (irx1a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
MRP-S32
Motif
Other DBs
NCBI-GeneID:
134082001
NCBI-ProteinID:
XP_062393615
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Position
6:complement(4824772..4829233)
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AA seq
461 aa
AA seq
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MSFPQLGYPQYLSASQAVYGGDRPGVLTPSSRGGSAEIGSSPSAAAAAVSSVLGMYANPY
SAQHYSAFLPYTSADLALFSQMGSQYDLKDSPGVHPASFAAHTSPAFYPYGQFQYGDPAR
PKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK
VTWGARSKEDEDGNIFGSDNEGDADKHEDEEEIDLESIDIDKIDDNDGDQSNEDEEEKAE
ARERVDLENLEKRRVLALQAHEVFEKSKNSLSVGKDSSDSNNNTRVLSPGEPGSFPLPVN
NKPKIWSLAETATSPDSSQKPTSPSGPTGPTAAQLQHPAFLSSHGLYTCQIGKFHNWTNG
AFLGQNSLLNVRSFLGVNQHHHNHHSHQFHTQQPSAVLLSSVASLSRESSPEDLSPKHSD
RENVGTESPTQPLKSSFRPIHESPRNQQEATQRVLTALSSA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcccccagctgggctacccacagtatttaagtgcctcccaagcggtgtatggc
ggggacaggccgggagttttgactccctccagccgcggaggcagcgctgagatcgggtcc
agcccttcggcggctgctgctgcggtcagctcggtgctgggcatgtatgccaacccgtac
tcagcccagcattatagcgctttccttccctacactagcgccgacctggcgctcttttcg
caaatgggctctcagtatgacctaaaagacagtccaggcgtacatccagccagcttcgct
gcacacacatctccggccttctacccatacggccagtttcagtacggtgacccagcccgg
cctaagaatgccacccgggagagcaccagcacgctgaaggcctggctaaatgagcaccgg
aagaacccgtaccccaccaaaggcgagaaaatcatgctggccatcatcaccaagatgacc
ctcacgcaggtgtccacctggttcgccaacgccaggaggaggctgaagaaggagaacaag
gtgacgtggggggcaaggagtaaagaggacgaagatggaaacatttttggcagtgacaac
gagggtgacgccgacaagcacgaggacgaggaggagattgatctggaaagcatagatatc
gataagattgacgataacgacggagatcaaagcaacgaggacgaagaggagaaggcagag
gcccgcgagcgagtggacttggagaacctggagaaaaggcgggttcttgcactacaagca
cacgaggttttcgaaaaatctaaaaactctctttctgtgggaaaagactcatctgacagc
aacaacaacacgagggtactgtctccgggtgaaccgggcagttttccgcttccggtgaac
aataagccaaaaatatggtccttagcagagactgccactagccctgacagctctcagaaa
cccacgtcaccctctggccctaccggtcccacagcggcccagctccagcacccggccttc
ctgtcgagccacggactttacacatgccagattgggaaatttcacaactggacaaatggc
gctttcctgggccagaactccctgctcaatgtcaggtctttcctgggagtaaatcagcat
caccataatcaccacagccaccagttccacacgcagcagccttccgcagtgctcttgtca
tcggtagcgtcgctaagccgcgaaagcagtccagaggatctcagtcccaaacactcagat
cgggaaaatgtaggaactgaatcgccaacacaacccttgaagtcatcattccgaccaatc
catgaaagccccagaaatcaacaagaggcgacgcaacgagttctgacagccctgtcttcc
gcctga
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