Sardina pilchardus (sardine): 134082447
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Entry
134082447 CDS
T10667
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134082447 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134082447 (cnot3a)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134082447 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134082447 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
134082447
NCBI-ProteinID:
XP_062394158
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All DBs
Position
6:complement(3888096..3901322)
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AA seq
980 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVDSIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALMA
TSPQGQSNLEDEMFLQSSSTPTSTTSSSPIPPSPATGTASPPGLLLLHQPEATLAAPNTP
HPPLLSSISYPGHSSSLPWENSEEDKKRGRSTDSEVSQSPVKNGNPSHLSFSSSSSSSSG
STPSSVSMATVVGGVPAVSSGSNLLGSFSSAVQQHPPQSQSQQPPPQQPQQALPKTPSTP
IPIPTNSTPSPPSFPTLPPSSTPSLPSSSTPAPATPNSQPLVSSGPSTVASGLGLGLGLG
GLGKGGVTVTSSSAQMSSLGLSAMTGSLSSMAGLLSTSTPAPYAQAAAGGVGSAPGGPVG
SGSSGGSGGGGISISSTMPTPSSVLGGVGGGVSSSAGTTSNGTGSSLGLLGSSPGHGVLS
GGILGLVQQGQSGLQGAPQVPLSPVGVAPGSGTGVSLLGGNGGSTGNAAGSGVVGGNAAP
ARPPSVLKQNGGTSENLFSYSAIVADNTPDSTLNSGSQSQSSQPSSLSSSGNPPLDNGPS
LLSSITLPPSSPSPSFTDTTPGGGSLLNGPHSYTPNSEVIKAPEPLSSLAAMAKRAVRLD
PGLDGEISSLHLSERDIFTSSSTSSAPPVAPQPTVSEVNLPPSLGVCPLGPTPLSKEQLY
QQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPHHSDSIEFYQRLSTETLFF
IFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWG
QRKKEGFTFEYRYLEDRDLQ
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaactccaaggtgaaatagatcgatgtttgaaaaaagtcgcagag
ggtgttgagcagtttgaagacatctggcaaaagttacacaatgcagccaatgccaaccag
aaggaaaagtatgaggctgacctcaagaaagaaattaaaaagctccagcgactacgagac
cagattaagacatgggtggcatccaacgagatcaaggacaagaggcaattagtggagaac
cgcaaattgatagagacgcaaatggagcggtttaaagtggtggagagggagacgaagacg
aaagcttactccaaggaagggctgggtttggcccagaaagtagaccccgctcagaaggag
aaggaggaaacggaacagtggctaacgaatacgatagacacactaaacatgcaagtggac
cagtttgagagtgaagtggagtcgctctctgtccaaacaaggaaaaagaagggagacaaa
gataaacaagaccgcatagaggagctgaagcgactgatagagcggcaccggtaccatatc
cgcatgctggagaccatcctgcgaatgcttgacaacgactcaattcaggtggattccatc
cataagatcaaagatgacgtggagtactacatcgactcctctcaagaccccgactttgag
gagaacgagttcctctacgacgacctggacctggaagatatcccggcggcgttgatggcc
acgtctcctcaaggtcaatctaacttggaggatgagatgttcctgcagtccagcagcacg
ccgacctccaccacctcctcctcgcccatccctccgtcgcccgcgaccggcaccgcgagt
ccgccaggcctcctgctcctccatcagcctgaggccacactcgctgcacccaacacccca
cacccacctctcctctcctccatcagttacccaggccactcctcttctctcccttgggag
aactctgaagaggacaagaagagagggcggtccaccgacagtgaagttagtcagtcacct
gtgaagaatgggaatccatcgcacttgtccttctcctcctcctcctcctcttcctctggc
tccacgccctcttcggtctccatggccacggttgtcgggggagtcccggccgtgtccagc
gggagcaacctcctgggcagcttcagcagcgccgtgcagcagcatcccccccagtcccag
tcccagcagccgcccccgcagcagccccagcaggccctgcccaagaccccctccaccccc
atccccatccccaccaacagcacccccagcccccccagcttccccacactccccccctcc
agcaccccctccctgcccagctccagcacccctgccccggccacgccaaactcccagccc
ctggtctcctcggggcctagcacggtggcctcgggcctgggcctggggctcggtcttggg
ggcttggggaagggcggcgtgactgtgaccagcagctcggcgcagatgtccagcctgggc
ctgtcggcgatgaccggctcgttgagcagcatggcggggctgctctccacttccacgccg
gcgccgtacgcccaagcggccgcgggcggagtgggcagtgcccccggcggtccggtgggg
agcggaagcagcggcggcagcggcggcggcggcatcagcatcagcagcacgatgcccacg
ccgagctcggtcctgggtggcgtcggaggaggcgtcagcagcagcgcgggcacgaccagc
aacggcaccggctcgtccctggggctcctggggtccagcccgggccacggcgtgctgagc
ggcggcatcctgggcctggtgcagcagggacagtcgggcctgcagggggcgccgcaggta
cccctcagccccgtgggcgtcgccccggggtcgggcacgggcgtgagcctcctggggggc
aacggaggaagtacgggtaacgcagcgggctcgggcgtcgtcgggggcaacgcagcgccc
gccagaccacccagtgtcctcaaacagaacgggggcacgagtgagaaccttttcagttac
agcgccattgtcgcggacaacacacctgactccaccctcaacagcggtagccaatcacaa
agcagccagccctcgtctctcagttcctcgggcaatccaccgctggataacggccccagt
cttctgagctccatcacccttccgccctcctcaccgtctccctcgttcacggacaccacc
cccggtggcgggagtctgctcaacggcccgcactcctacacaccaaactctgaggtcatc
aaggcccctgagccgttgagttctctggctgccatggcaaagagggcagtcagactggac
cctggactggatggagagatttcctctttacatctctcagagagagacatcttcacaagc
tcctcgacctccagcgcgccccccgtcgcccctcagccgaccgtctccgaggtcaacctg
cctccgtcgttaggggtgtgtccgctgggccccacgcccctgtccaaagagcagctctac
cagcaggccatgcaggagtctgcctggacacacatgcctcacccgtccgactccgagaga
atcaggcaatacctgatgaggaacccgtgccccaccctccccttccaccatcaggtcccc
ccccaccactccgactccatcgagttctaccagagactgtccacggagaccctcttcttt
atcttctactacctggagggcacaaaggctcagtatttgtccgctaaagctctgaagaag
cagtcttggaggttccacaccaagtacatgatgtggttccagaggcacgaggagccaaag
accatcactgacgagtttgaacagggcacatacatctactttgactatgagaagtggggc
cagcgcaagaaggagggtttcacgttcgagtaccgctacctggaggaccgggacctgcag
tga
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