Sardina pilchardus (sardine): 134082669
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Entry
134082669 CDS
T10667
Name
(RefSeq) polyadenylate-binding protein 1A-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134082669
09123 Folding, sorting and degradation
03018 RNA degradation
134082669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134082669
03041 Spliceosome [BR:
spil03041
]
134082669
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134082669
mRNA cycle factors
Stress granule specific factors
134082669
Spliceosome [BR:
spil03041
]
Complex C
Other components
Complex C specific factors
134082669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_RDR6
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
134082669
NCBI-ProteinID:
XP_062394529
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All DBs
Position
6:complement(14146738..14158577)
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AA seq
632 aa
AA seq
DB search
MNHSAAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGARAKEFTNVYIKNFGEDMDDEKLREIFGKFGPALSIRVMTDESGRSKGFGFVSYE
RHEDAQRAVDEMNGKEMNGKLLFVGRAQKKVERQTELKRKFEQMKHDRMTRYQGVNLYVK
NLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA
TKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVINPYQPAPPSGYFMAAIPQAQNR
AAYYPPSQLAQLRPGPRWATQGMRPQHFQSMQANTMRPSAPRPQTFSTVRPASQVPRMVA
SQRMTSQNLGPRPASATAPSAAPVRGVPQYKYAAGVRNPQLGSQPHSAMQQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPNLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKEAAQKSVTGPAVPAV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacagcgcagctcccagttaccccatggcctccttgtatgtcggggatctccat
cctgatgtgaccgaggcaatgctctatgagaagttcagtcctgccggccccatactttca
attcgggtttgcagggatatgataacacgtcgatccctcggatatgcctatgtgaacttt
cagcaaccggcagatgctgagcgagccctggacaccatgaacttcgatgtcatcaaaggc
aggcctgtgcgcattatgtggtcccagcgtgacccttcactcagaaagagtggggttgga
aacatattcattaaaaacctggacaagtccatcgacaacaaggccctttatgacacattt
tctgctttcggaaacatcctctcttgcaaggtggtttgtgatgagaatggctcgaagggc
tacggctttgtgcactttgagacccaggaggcggcagagagagccattgagaaaatgaac
ggcatgctgcttaatgatcgcaaagtgtttgtggggcgttttaagtcccgcaaggagcga
gaggctgagctgggtgcccgtgccaaagagttcaccaatgtctacatcaagaactttggg
gaggacatggacgatgaaaaactgcgcgagatctttggcaagtttggccctgcactgagc
atcagggtgatgacagatgagagcgggaggtccaaaggctttggcttcgtcagctatgag
agacacgaggatgcacagagggccgtggatgagatgaatgggaaggagatgaatggtaaa
ctgttgtttgtgggccgggcgcagaagaaggtggaacggcagacggagctcaagcgcaaa
tttgagcagatgaagcatgaccgcatgacccgctaccagggtgtgaatctctatgtgaag
aatctggacgatgggttggatgatgagcgcttgcgtaaagaattctccccatttgggacc
attaccagtgccaaggtcatgatggagggcggtcgcagcaaaggcttcggctttgtgtgc
ttctcctcgccagaggaggccaccaaggcggtgacggagatgaacgggcgcatcgtggct
accaagcccttgtacgtggcgctggcacagcgcaaggaggagcgccaggcccacctcacc
aaccagtacatgcagaggatggcaaccgtccgggccgtgcccaatccagtcatcaacccc
taccagcccgcgccaccctccggctacttcatggctgccatcccccaggcccagaaccgc
gcggcgtactaccccccaagccagctggcacagctcagacctggcccacgctgggccacc
cagggcatgcgccctcagcatttccagagcatgcaagcgaacaccatgcgaccatctgca
cctcgtccgcagaccttcagcactgtgagaccggcttcccaggtgccacgcatggtggca
tctcagcgcatgacctctcagaatcttggcccacggccggccagtgccaccgctccttct
gctgccccggtgcgcggcgttccccagtacaagtacgccgcaggagtgaggaacccacag
ctgggctcacagccacactccgccatgcagcagcctgctgtccatgtccaaggccaggag
ccgctgacggcctccatgctggcagcagcccccccacaggagcagaagcagatgttggga
gagcgcctgttcccactgatccagaacatgcaccccaacctggcggggaagatcacaggc
atgctgctggagatcgacaactccgagctcctccacatgctggagtctccagagtctctg
cgctccaaggtggatgaggccgtggctgtgctgcaggctcaccaggctaaagaggctgct
cagaagtctgttactggcccagctgtgccagctgtttaa
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