Sardina pilchardus (sardine): 134087056
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Entry
134087056 CDS
T10667
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
134087056 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spil03400
]
134087056 (xpc)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
134087056 (xpc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
134087056
NCBI-ProteinID:
XP_062396243
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Position
7:404047..416844
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AA seq
926 aa
AA seq
DB search
MAKHKGPADVAVKSDTTKKLKQVAAAKGKVGRGKISQKTAENGVKVVPKKSKTKSQTSKK
AASSPAKKHTSKYFQDQPMKREPEIMNVDADDSDEDDDDDFIVPAAAVAPGVKKTQTKKG
EEDKDDEECEDDSDEDGDWEEVEELSEPFGPAAPVEPAVPSQPVEIEIETPDVARKRQQK
EKRKTEFENYLRRMMNRFNKDLIEDTHKVHLLCLLANGIFRNSVCKEPDLIAITLSLLPS
HFTAVTPNRVDTLFLNDLSKWFGTTFTVNPELPQEKGQELRTVLERRLGSLTARNHEEMT
HLFLLVLRALQLFCRLVLSLQPLSIKPPPAKDKTKTSKSAADKSPGTSKKSLSDMSSPEA
KVSPGSKRPAAGRGDDKAERGGKRLKKRDRAGEKEGTGQRPKNTKRRSVASKVSYKDESS
DEEMEEQEAGSEEEFQLSSGGESEEEEEEEEKEGGPRKGRGGKAKGKKKKKMKEEEEEEE
EEEEDEGEEEEEMGKTRGKRRQGKGNDEWLEVYLEEVGRWVCVDVEQGVGQVQRCSGQAT
QPISYVVAVDGDGYVKDLSSRYDPTWLTSSRRRRVDQDWWDETLLFYEAPDSEREKKEDN
ELEAKLLSKPLPTAISEFKNHPLYALKRHLLKYEALYPSTAAILGYCRGEPVYSRDCVHT
LHSRDTWLKEARTVRLGEEPYKMVKGFSNRSRKARSMSEQKEEKDLPLFGEWQTEEYQPP
VAVDGKVPRNDFGNVYLFKPCMLPIGCAHLRLPNLHRVARKLEIDCALAVTGFDFHGGYS
HAVTDGYIVCEEHQEILRAAWENEQEIQQKKEIEKREKRVVANWTLLVKGLLIRERLKRR
YGQQGLTQQQAGVEQGGADGLSSGEEEVKEEKDEREGGGPSVDPPSLASSWPQNRQEETK
ETTKQASSSKREKRGQQKHLFPFEQV
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacataagggaccagcagatgttgctgtgaaaagtgacacgacaaagaaactg
aagcaagtcgcagcagcaaagggcaaagtcgggaggggaaagatatctcagaagacagca
gaaaatggggttaaggtggtccccaagaaatccaaaaccaaatcccaaacttcgaagaaa
gcagccagttcccctgccaagaagcacaccagcaaatacttccaggaccagccaatgaaa
agagagcctgaaatcatgaatgtcgatgcggatgacagcgatgaagatgatgacgatgac
ttcattgtacctgctgctgctgttgcaccaggggtgaagaaaactcagaccaaaaaagga
gaggaagacaaagacgatgaggagtgtgaggatgacagtgatgaagatggcgattgggag
gaggtggaagagctctcagagccgtttggtcctgcagctccggtggagccggcggttcca
tctcagcccgtggagatcgagattgaaaccccagacgtcgcccgcaagagacaacagaag
gagaagaggaagaccgagtttgagaactacctgcgtcgcatgatgaaccgctttaacaag
gacctaatagaagacacacacaaggttcacctgctgtgtctgctggccaatggaatattc
cggaacagtgtgtgcaaagaaccggatctcatagccattactttgtcactattgccctcc
cacttcacagcagttaccccgaatcgggtcgacacactatttctcaatgacctgtcgaag
tggtttgggaccaccttcacagtgaaccctgagcttcctcaggagaaaggccaggagctg
aggacggtcctggagaggaggctggggagtctgaccgccagaaaccatgaggagatgact
cacctgttcctgttggtgctaagggcactgcagttgttctgcaggctggtgctctctcta
cagcccctgtcaatcaaaccaccccctgccaaggacaaaactaaaacttccaagtctgca
gctgataaaagccccggcacgtctaaaaagagcctctcggatatgagctcccctgaggcc
aaagtatccccagggtccaagcgtccggccgcgggccgaggggatgacaaggcggagagg
ggagggaagcggctgaagaagcgagacagagcgggagagaaggaggggacgggacagcgt
ccgaaaaacaccaagagacgcagtgtggcctcaaaggtcagctacaaggacgagagcagc
gacgaggagatggaggagcaggaggctggcagcgaagaggagttccagctgagcagtgga
ggagagagcgaggaagaggaggaggaagaagagaaggagggaggaccaagaaaggggcga
gggggaaaggccaaagggaagaagaagaagaagatgaaggaggaggaggaggaggaggag
gaggaggaggaagatgagggggaggaggaggaggagatgggcaagacgaggggcaagagg
aggcagggcaaggggaacgacgagtggctggaggtgtacctggaggaggtgggcaggtgg
gtgtgtgtggacgtggagcagggcgttggacaggtgcagcgatgctccggccaggcaacg
cagcccataagctacgtagtggccgtggatggagacggctacgtcaaggacctgagcagc
aggtacgaccccacctggctcacatcgtctcggagacgccgcgtggaccaggactggtgg
gacgagacactgctgttctacgaagcgcccgactcggagagggagaagaaggaggacaac
gagctggaggccaagctgctgagcaagcccttgcctacggccatctcggagttcaagaac
cacccgctgtacgccctgaagaggcacctgctgaagtacgaggccctgtacccctccaca
gcagccatcttgggctactgcaggggggagcctgtctactccagggactgtgttcataca
ctgcattccagagacacatggcttaaagaggcacgcactgtccgtcttggagaagagccc
tacaagatggtgaagggcttctccaaccgctcgcggaaggctcgctcgatgtccgagcaa
aaggaggagaaggacctcccgctgttcggagagtggcagacggaggagtaccagcctccc
gtggctgtggacgggaaggtccctcgcaatgactttgggaacgtgtacttgttcaagcct
tgcatgttgcccattggctgtgctcacctgcgcttgccaaatctgcaccgcgtggccagg
aagctggaaatagactgtgctttagcagtgaccggattcgacttccacggtggctattca
catgcagtaactgatggatatattgtttgtgaggaacatcaggagatcctgagagctgca
tgggaaaatgaacaagagattcagcagaagaaggagatagagaaacgagagaagcgtgtg
gtagcaaactggactctgctggttaaaggtcttctgatcagagagaggctcaagcgtcgc
tacgggcaacagggcctcacccagcagcaggcaggggttgagcagggaggggcggatggc
ctgtcctcaggagaggaggaggtgaaggaggagaaggatgagcgggagggaggtggaccg
tctgtcgaccccccctcactggccagctcctggccccagaacaggcaggaggaaacaaaa
gagacaactaagcaagccagcagcagcaagcgagagaagcgcggccaacagaaacacctc
ttccctttcgagcaagtttga
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