Sardina pilchardus (sardine): 134087075
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Entry
134087075 CDS
T10667
Name
(RefSeq) embryonic polyadenylate-binding protein B-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134087075
09123 Folding, sorting and degradation
03018 RNA degradation
134087075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134087075
03041 Spliceosome [BR:
spil03041
]
134087075
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134087075
mRNA cycle factors
Stress granule specific factors
134087075
Spliceosome [BR:
spil03041
]
Complex C
Other components
Complex C specific factors
134087075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
134087075
NCBI-ProteinID:
XP_062396267
LinkDB
All DBs
Position
7:1819584..1929405
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AA seq
662 aa
AA seq
DB search
MNTGQAYPLASLYVGDLHPDVTESMLYQKFSPAGPIMSIRVCRDVITRRSLGYAYVNFQQ
PADAECALDTMNYEVLKGRPMRIMWSQRDPGLRKSGVGNIFIKNMDDSIDNKALYDTFSA
FGNILSCKVVCDERGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVQEAGKEMETDSAD
PSIANPKLQSMWKNCQLSTISFVGHFKSRKEREAECGAKAMVFTNVYIKNFGETYDDKQL
ESIFSEFGKTLSVRVMRDERGISRGFGFVNYENHEDAQKAVDVMNGKELNGRMLYVGRAQ
KRVERQGELKRKFEQIKMDRMHRYQEKSSGVNLYVKNLDDSISDERLRKEFAPYGTITSA
KVMTDGSHSKGFGFVCFTSPEEATRAVTEMNGRIISTKPLYVALAQRKEERKAILTNQYM
QRLASVRTMPGTLVTNYQQPSYYIPTMPQPPGRHPYNPASNVRFGPRWPAQPPRPQALYS
AQYVTTRRASNPISSVQQASTQAPRIPKNMLRMGMPSNIGTQTAGRRAVTGGVSRGVSQY
KYSSGVRNVQQVMPAPLPPVGQQVASGPVVEPAVHVRGQEPLTASMLASAPLMEQKQLLG
ERLYPLIYALHPSLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKELA
TK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaacactggtcaagcttatcccctggcctccctctatgtgggggatctccatcctgat
gttactgagtctatgctgtaccagaagttttcacctgctggaccaattatgtctatccgt
gtatgccgtgatgtcattactcgcagatctttggggtatgcttacgttaactttcagcag
cctgcagatgcggaatgcgctcttgacacaatgaactatgaggtactcaagggtcgacca
atgagaatcatgtggtcacagcgggatcctggtctaaggaagtctggcgttgggaatatc
ttcatcaagaacatggatgactccattgacaacaaggcactttatgacaccttctctgcg
tttggaaatattctgtcctgtaaggttgtgtgcgacgagcgtggttctaaaggctatggc
tttgtgcactttgagacacaagaggctgccaaccgtgccattgagaccatgaatgggatg
ctgctgaatgatcgtaaagtacaagaggcaggtaaagaaatggagacagacagtgcagat
ccaagcattgcaaacccaaagctccagtccatgtggaaaaattgtcagctgtccacaatt
agttttgtaggccattttaaatccagaaaagagcgcgaggcagagtgtggagcaaaggct
atggttttcactaatgtttacatcaagaactttggtgaaacctatgacgacaagcaactt
gagagcatcttctcagagtttggcaagaccctgagtgtgagggtgatgcgtgatgagcgt
gggatctcgcgtggctttggctttgtgaactatgagaatcacgaggatgctcagaaggct
gtggatgtgatgaacgggaaggagctgaatgggaggatgctgtatgtcggccgtgctcag
aagagggtggagcggcagggcgagctcaagcggaagtttgagcagatcaagatggaccgc
atgcaccgctatcaggagaaaagttcgggagttaacctttatgtaaagaacctggatgat
agcatcagtgacgagcgactgaggaaggagtttgctccttatggaaccatcaccagtgca
aaggtgatgacggacggcagccacagtaagggcttcggctttgtgtgctttacctctcca
gaggaggccactcgcgcggtcacggagatgaatgggcggatcatcagcaccaagcccctc
tatgtggcgctagcacagcgcaaggaggagcgcaaggccatcctcaccaaccagtacatg
cagcggctggccagcgtcaggaccatgcccggaaccctggtgaccaactaccagcagcca
tcctactacatccccaccatgcctcagcctccaggccgtcacccatacaacccagcttct
aatgtccgctttggcccaagatggcccgctcagcctccccgaccacaggcgctgtattct
gctcagtacgtgacgacccgccgggcctccaaccccatcagcagtgtccagcaggcctcc
acacaggccccgcgcattcccaaaaatatgctaaggatgggtatgccatccaacattggt
acccagaccgcgggaagacgagcggttactggtggtgtgagtcgcggggtcagccaatac
aaatactccagtggagtccgcaacgtccaacaggtgatgcccgcacctttgccccctgtg
ggccagcaggttgcgagcggcccagtggtggagccagcggttcatgtaaggggacaggag
cctctcacagcctctatgctggcgtccgctccactcatggagcagaaacagctgctgggt
gagcgtctgtaccccctgatctacgccttgcaccccagcctggccgggaagattactggc
atgttgctggagatcgacaactccgagctgctccacatgttggagtctcccgagtctctg
cactcaaaggttgaggaggcagttgctgtgcttcaagctcaccaagctaaagaacttgca
actaaatga
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