Sardina pilchardus (sardine): 134087574
Help
Entry
134087574 CDS
T10667
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134087574 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134087574 (pan2)
Enzymes [BR:
spil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
134087574 (pan2)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134087574 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
134087574 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Motif
Other DBs
NCBI-GeneID:
134087574
NCBI-ProteinID:
XP_062397142
LinkDB
All DBs
Position
7:complement(20374367..20387476)
Genome browser
AA seq
1206 aa
AA seq
DB search
MMNFEGMDPGLGDYSSGLHGSLEPGLESSLDPRLDPSLLQGVELDPDGLAVPADSVHLLE
GLFSELHSVAAEVGIPVTATHFDVQEELLWMGNHRGHASSFFGPTMGRYSSFQVHLSDDV
RHIQSMETGVLFLTKNNLKCVTRGGFIMFDYPMEEGADMHSVLVTDNNTLMMAGLQNYVI
EVDLTTVQETQKFDVEAPGVAIIRQSNRFLFCGHTSGKVSLRDPRTFAMEHEFDAFSGSL
SDFDVHGNLLAACGFSSRGMNGLACDRFLMVYDLRMMRAITPLQVHVDPLFLRFIPTYTS
RLAIISQSGQCQFCEPTGLANLADVFHINTVGQLLMSFEVSSSKQALSFGDSGGCVHLWS
STPDVTYNGYSRETDFALPCLVDSLPQLDWGHDLLPLSLIPTPLTTEPLVSDWPTTLATP
SPRHAPAVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKEVELEYDGYNQVPESPIGR
DEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNSMIQVLYFL
EPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLILA
DSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSGSGSSTESAIGHLFG
CEVENSSLCRCGKETVRSSLTLLFTLHYPEQSSTDKIPKEYDFVDILKKSICLEQSTQAW
CDNCEKYQPTVQTRNIRCLPDVLAINCEVNSVKEMEFWKVQAEYAHTKALKKEAAEPPKP
KPEPLPTEWCLENELSNTEGLTFDTKAEDLQHVWIPLSLKMSISKSQGLEVTTWPEGEEL
SAAEEAEGASVYDLVVTVSHVLDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLFNDFLI
EPIDKQTESAQFDVNWKVPAILYYAKRNYHSKYDLRIKNPIEASVLLTEASLARKQRKSH
ATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQG
SNERVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGV
RFVGHGLQKDFRVINLLVPKDQVIDTVYLFHMPRKRMISLRFLAWYFLDLNIQGETHDSI
EDARTALQLYRKYLELSRGGNDDVRKVLKGLYEKGRKQDWKVPEADPTDGQGSPKSSSVF
PSVMEL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacttcgagggaatggatcctggcttgggcgattactcgtctgggttacatggt
agccttgaaccaggtctagaatcctctctggaccctagactcgacccatcgctgttgcaa
ggtgtggagctagatccagatggccttgcggtgcctgctgattcggtgcatcttctggag
ggcttgttttcggagttgcatagcgtcgctgcggaagttggtattcccgtcacagcgaca
cacttcgatgtgcaggaggagctcctctggatgggaaaccaccggggtcatgccagttcc
ttctttggccctacaatgggccggtactcctcattccaggtgcacctgagtgatgacgtc
cgtcatatccagagtatggagacaggagtgttgttccttaccaagaacaacctcaagtgt
gtcactcgtggtggattcatcatgtttgactatccaatggaggagggagctgacatgcac
agtgtgttggtgactgacaataacacattgatgatggcgggccttcagaactatgtgata
gaggttgatctcactacggtgcaagaaacgcagaagtttgacgtggaggctccaggggta
gccatcattagacagtccaatcgtttcctcttctgtggacacacgtctggtaaggtgtct
ctccgtgacccgcggaccttcgccatggagcacgagtttgatgccttctcgggcagcctg
tccgactttgacgtgcatggcaacctgctagcggcgtgcggcttctccagccggggcatg
aacggcctggcctgcgaccgcttcctcatggtgtacgacctgcgcatgatgcgggccatc
acgccgctccaggtgcacgtggacccgctcttcctgcggttcattcccacctacacctcc
cgcctggccatcatctctcagagtggccagtgccagttctgcgagcctaccggcttggcc
aacctggccgatgtcttccatatcaacacagtgggtcagctgctcatgagcttcgaggtg
tcctccagcaagcaggcgctgtcctttggtgactcgggcggctgtgtgcacctgtggtcc
agcacaccagacgtgacctacaacgggtactcgcgcgagacggacttcgccctgccctgc
ctggtggactcgcttcctcagctggactgggggcacgacctgttgcctctctcgctcatc
cccaccccgctgaccacggagcccctggtctcggactggcccaccaccctggcaactcct
agccccagacatgcacctgctgtggacccagaaattcttcgtaccatgaaaacagtgggc
tttattggctacgcccccaatccccgcacacgccctagaaatcaggttccctacaagatc
aaagaggttgagctggagtatgatggttacaaccaagtaccagagtctcccattggtcga
gatgaagagccacacttatacatggttccaaagaagtatcgcaaggtcactattaaatac
tcaaaacttggacttgaggactttgatttcaagcattacaacaggacactgtttgctggc
ctggagccacatattcccaatgcttactgcaacagcatgatccaggtgctgtactttctg
gagccaatccgatgcttagtgcagaatcacctgtgccagaaggagttctgtttggcctgt
gaacttggcttcctcttccacatgttggatctgtctagaggagacccctgccaggccagt
aacttcttgcgcgctttccgcaccattcccgaggcgtccgcattgggcctgatcctggcc
gactcggatgagcagacgggcaaggcccgattgggccgcctcatccagagctggaaccgc
ttcatcctcacccagctccaccaggagacccaggagcaggagggaccccaggcctaccgg
ggggccagcagcagtggctcggggtcatcaacagagtctgcgattggccacctgttcggc
tgcgaggtggagaacagtagcctgtgtcgctgcgggaaggagaccgtgcgctcttcgctg
acgctgctcttcaccctgcactaccccgaacagagctccaccgataaaattcctaaagag
tatgactttgtggatatcctaaagaagagcatctgtctcgagcagagcacacaggcttgg
tgtgacaactgtgagaagtaccagccaacagtgcagacgcgcaacatccgttgcctgccc
gacgtgctggccatcaactgtgaggtgaacagtgtgaaggagatggagttctggaaggtg
caggccgagtatgctcatactaaagccctgaagaaagaagccgccgaaccaccaaagcca
aaacccgaacctctcccaaccgaatggtgcctagagaatgagctgtccaatacagagggc
ctgacctttgacaccaaggcagaggacctgcagcacgtgtggatccccctcagcctgaag
atgtccatcagcaagagccagggtctggaggtcactacctggccagagggagaggagcta
agtgctgcagaggaggctgaaggggcttcagtgtatgacctggtggtgactgtctcacac
gtgctggacgcacgcaccggtggtaacctggtggcccacatcaaggttggggagacctac
caccagaggaaggagggtgtgacgcatcagcagtggtatttgttcaatgatttcctgatt
gaacccatcgacaagcaaactgaatctgcccagtttgatgtgaactggaaggtcccggct
attctctactatgccaagaggaactaccactccaaatatgacctgcgcattaaaaatcct
atagaggctagtgtgcttctcacagaggcttctctggcacggaagcagaggaagagtcat
gcgaccttcatccccctcatggtcagtgagatgccgcaggcaggagatctggtgggactg
gacgccgagtttgtcacactaaatcaggaggaggcagagctacgcagtgacggcactaaa
tccaccatcaagcctagccagatgtctgtggcccgcatcacctgcgtaaggggccaaggg
tccaatgagagagtccccttcatagatgattacatctcaactcaagagcaggttgttgac
tacctgactcagtattctggaatcaagcctggtgatcttgatgccaagatttcctccaag
cacttgaccactctgaagtctacttacctcaagctacgcttcctcattgacacaggcgtt
cggtttgtaggccatggcttacaaaaggacttccgtgtcatcaacttattggtgccgaaa
gaccaggtcattgacacagtgtacctctttcacatgccacgaaagagaatgatctcatta
cgtttccttgcctggtacttcctggatctgaatattcagggtgaaacacacgacagcatt
gaagatgcccgcacagccctgcagctttacaggaagtacttggagttgagtcgagggggc
aacgatgacgtccggaaagttctaaaaggactgtatgaaaagggacgcaagcaggattgg
aaagttccagaggcagaccctacagatggtcaaggtagcccaaaaagttcatcagtgttt
ccttcggtgatggagctgtaa
DBGET
integrated database retrieval system
