Sardina pilchardus (sardine): 134088612
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Entry
134088612 CDS
T10667
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03030
DNA replication
spil03410
Base excision repair
spil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134088612 (pole)
03410 Base excision repair
134088612 (pole)
03420 Nucleotide excision repair
134088612 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spil03032
]
134088612 (pole)
03400 DNA repair and recombination proteins [BR:
spil03400
]
134088612 (pole)
Enzymes [BR:
spil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
134088612 (pole)
DNA replication proteins [BR:
spil03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
134088612 (pole)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
134088612 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Msg2_C
GARP
TCTP
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
134088612
NCBI-ProteinID:
XP_062398643
LinkDB
All DBs
Position
8:9737346..9766216
Genome browser
AA seq
2286 aa
AA seq
DB search
MVLQNSGRFKADRGGGDQENQQDDMSGQSAAKRLERSQFTDEMDARFGFERMKDPGEKTG
WLINMHPTEILDDDKRLISAVDYYFIQDDGRRFKVALPFKPYFYVATRKNCEREVISYLS
KKFQGKVAKLEVCPKEDLDLANHLVGLKRNYVKLSFNTVDDLIKVKREIAPAVRKNRERE
KSNETYTSMLSSALVGGNVAAGDEDGPSKKMADQLDNIVDMREYDVPYHVRLSIDLQIHV
AHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYMI
DGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAALLQRFFEHVHETQPNIFV
TYNGDFFDWPFVETRAAQHGLNMYKEIGFQKDGQGEYKSSQAIHMDCFRWVKRDSYLPVG
SHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTSDGHVMDSETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLLQMVERTIRHAIEEEENIPLDQVTNFNEVC
DEIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEAICAACDFNKPG
ANCQRRMTWHWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGRPRAFHQLDREEQARHEK
KRLADYCRRAYKKVHVTKLEARVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
QAQDAGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGA
NIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSTNEKKPKVTISYPGAMLNIM
VKEGFTNHQYQELVDPANLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSK
AANMPDTELFELIAENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVI
SRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHELDIRSIIDWNYYIERLGSA
IQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIFKQKKISELFTSEGKRQVAQTLE
PGEAADIEDFGKPPRPLQPAILISTKRKRASQGEESQAESQEMELTQSWREILGPPPPKG
PSKEELLVWLRYHKKKWELQLRQRKERRKKRRLVDGDSTPAGGGVIRDGPTTALGTFLRK
TARSMLDMPWQIIQIAETSHPGLFKLWAVIGSDLHCMKLTIPRVFYVNQKIPKQDEGPTY
RKVNRILPRSNVVYYLYQYTVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQL
GCMCMVNKQAVRDMAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKALFG
LFIPSQRKASVFVLDTVRSNQMPNLSTLYGAERTALLEKTSEDLLPPEKHQFEVRAENDP
KAIYRAVQRILLNYKEERRGPTLIAVQSNWELRRLAAGMAVLEEFPVVPVHVVDEISYSV
LDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKHN
HLLWLSPTTRPDLGGKEADDSRLVMESDDRASVEINSQGCYSTVCVELDIQSLAVNTILQ
SQHVNDMEGGASMGVSFDVIQHASLEEMMSGNQAAPAVASYDETALCSNTFRILKSMVVG
WVREITQYHNVYADNQVMHFYRWLRSPNSLLYDPALHRTLNNMMKKIFLQLVAEFKRLGS
SVVYGNFNRIILCTKKRRIDDAIAYVEYITNSIHSREIFHSLSLTFSRCWEFLLWMDPAN
HGGVKGKLPSSILCGEDGGGKKKKEKAEGEEEGSEEEEEEEDEEEVGDGEEDVEDLIESN
WNIMQYLPQTASCQKYYLMIISAYIAAVYHSMREELRRNAPGTTPIKRRGGSQASQQAAG
DSNSLPGMISFSQEYVSGELTQNFFTITQKIQKKVMGTRNMTLPSEMFPVLPGSHLPLNN
PALEFIKYVCQVLSLDGNIVNQVNKLKRDLLRLVDVGEFSDDAQFRDPCHSYVLPEVICH
HCNFCRDLDLCKDPSMAQDGSVLPQWFCSNCQAQYETDSIEMALVEALQKKLMSFTLQDL
ECAKCKGVKEANMPLYCRCAGDFKLTFSTKSFSEQIRVFRNIADHYKMGFLQETIDWLLL
MSPQLA
NT seq
6861 nt
NT seq
+upstream
nt +downstream
nt
atggttctacaaaacagtggaagattcaaagctgatagaggaggaggggaccaagaaaac
caacaggatgacatgtccgggcagtcagccgccaagcggctggagcgcagtcagttcacc
gatgagatggatgcgcgcttcggcttcgaaaggatgaaagatcctggggagaaaacgggc
tggttgataaatatgcacccgacagaaatactggatgatgacaaaaggctgataagtgct
gtggactattacttcatccaggacgatggaagaaggtttaaggtggctcttccatttaag
ccatacttctatgttgctaccagaaagaattgtgagcgagaggtcatttcatacctgtca
aagaagtttcagggcaaagtggctaagctggaagtctgccccaaagaagacctggacctg
gcaaaccatctggtgggactgaagagaaattacgtcaagctgtccttcaacacagtggat
gatcttatcaaggtcaaacgggagattgcccctgctgttcgtaagaaccgagaaagagag
aagtccaatgaaacctatacaagcatgctgtcgagtgcgttggttggaggaaacgtcgcc
gcaggagatgaggacggcccatccaaaaagatggcagatcagttggacaacatagtggac
atgagagagtatgacgtgccctaccatgtccgcttatccattgacctgcaaatccacgtg
gctcattggtacaacgtccggtaccgtggcagtgcctatcctcctgagattgtaagaagg
gatgaccttgtggagcgaccggatccagttgtgctggcgtttgatatagagacgaccaag
ctgcccctcaagttccctgatgctgagtcggatcagatcatgatgatctcatacatgatt
gatggacagggttttctcattacaaacagagaaatagtctctgaggacattgaggatttt
gagttcacccccaaaccagagtacgagggaccgtttacagtgttcaatgagccagacgag
gcggcgcttctccagcgtttttttgaacacgtccacgagacgcagcccaacatctttgtc
acgtacaacggggacttcttcgactggccctttgtggagacgcgcgcagctcagcatggc
ctgaacatgtacaaggagatcggctttcagaaggacggccagggggagtacaagtccagc
caggccattcacatggactgtttcaggtgggtgaagagagacagctacctgcccgtgggg
agtcacaacctgaaggccgcggcgaaggccaagctgagttacgacccggtggagctggac
cctgaggagatgtgtcgcatggccaccgaggagccacagacactggccacttactcggtg
tccgacgcagtggccacatattacctctacatgaagtacgtccaccccttcatcttcgct
ttgtgcaccatcattccaatggagccggacgaggttttacgtaaaggctctggcacattg
tgtgaggctctactgatggtccaggccttccacgccaacatagtcttccccaacaagcag
gagcaggtgtttaacaagctgaccagcgatggtcacgtgatggactcggagacctatgtg
ggcggccacgtggaggccctggagtctggggtcttccgtagtgacatcccctgccgcttc
aaaatgaaccccgctgcttttgacttcctccttcagatggttgagagaactatacgtcat
gccattgaggaagaggagaatattccgctggaccaagttacaaacttcaatgaggtctgt
gatgagatcaaaaagaagctgatctcgctgaaggaggtgcccaacagaattgaatgtcct
ctcatctaccatcttgatgtgggggctatgtaccccaacatcatcctgacaaatcgcctg
cagccctctgccatggtggacgaggccatctgcgctgcctgtgactttaacaagccaggg
gccaactgtcagaggaggatgacctggcactggagaggggagatcatgcctgcgagtcgc
agtgagtttcatcgcatccaacagcagctggagtccgagaagtttcctcctttcttcccc
aacggccgcccgcgggccttccaccagctcgacagagaggagcaggctcgccacgagaag
aaacgtcttgccgattactgtaggagggcttataagaaggtgcatgtcacaaagctggag
gcgagagtcaccacgatctgccagagggagaactcgttctatgtggacaccgtccgagcc
ttcagagatcgccgttatgagttcaagggcttgcataaggtgtggaagaagaagctgtct
caggctcaggacgctggcgatgctgccgaggtcaagcgctgcaagaacatggagatcctg
tacgagtccctgcagctggcccacaagtgcatcctcaactccttctatggctacgtcatg
aggaaaggagctcgctggtactccatggagatggcaggaattgtgtgctacacaggagct
aacatcatcacccaagccagggagctcattgaacagattgggagacctttggagttggac
acggatggaatttggtgtgttctacccaactcttttcctgagaactttgtcatcaaatcg
accaatgagaagaagcccaaagtcaccatctcttacccgggagccatgcttaacatcatg
gttaaggagggctttaccaatcaccagtaccaggagctggtggacccggccaacctgacc
tacgagacgcgcgctgagaacagcatcttctttgaggtggacgggccttacctggccatg
atactgcccgcctccaaagaagagggcaagaagctgaagaagaggtacgccgtgtttaac
gaggacggctctctggccgagctgaagggcttcgaggtgaagcgcaggggagagctgcag
ctcatcaagatcttccagtcgtccgtgttcgaggccttcctcaagggcaccacgctggag
gaggtctacgcctccgtggccaaagtggccgactactggctggacgtgctctacagcaag
gctgccaacatgccggacactgagctgtttgagctcatcgcggagaaccgctccatgtcc
cgtaagctggaggactacggcgagcagaagtccacctccatcagcacggccaagcgcctg
gcggagttcctgggggaccagatggtgaaggacgcagggctgagttgccgttacgttatc
tcgcgcaaacccgaaggctcgcccgtcaccgagagggccatacctttggctatcttccag
gcagaaccttcagtcaaaaagcatttcctgcgcaaatggctgaagatgcccagtcttcat
gaactggacattagatctatcattgactggaactactacattgagcgtctgggcagtgcc
atccagaagatcatcaccatcccggcggcactgcagcaggtgaagaaccctgtgcccagg
gtgcgccaccccgactggctgcacaagaagctgctggagaagaacgacatcttcaagcag
aagaagatcagcgagctcttcaccagcgagggaaagagacaggtggcccagacgctggag
cccggggaggcggcggacatcgaggactttgggaagcctccgcggccgctgcagccggcc
atcctcatcagcaccaagcgcaagcgcgcgtcccagggggaggagagccaggcggagtcc
caggagatggagctcacgcagtcctggagggagatcctcggcccgccgccccccaagggg
ccctccaaggaggagctgctggtgtggctgcgctaccacaagaagaagtgggagctgcag
ctgcgccagaggaaggagcggcgcaagaagcggcggctggtggacggcgactccacacca
gcagggggcggcgtcatccgggacggccccaccaccgcgctgggcaccttcctgcgcaag
accgcccgcagcatgctggacatgccctggcagatcatacagattgctgagaccagtcac
ccaggcctgttcaagctgtgggcagtgataggcagtgacctccactgcatgaagctcacc
atccccagagtcttctacgtcaaccagaagatccctaagcaggacgagggacccacatac
agaaaggtgaaccggatcctcccccgctccaatgtggtgtactacctctaccagtacacg
gtacctgaggacatgtaccaggagcacatcaacgagatcaacgccgacctctccgctcct
gacatcgagggagtgtacgagacccaggttcccctgctgttcagagcgctggtgcagctg
ggctgtatgtgcatggtcaacaagcaggccgtgcgtgacatggcaggccgagaggccgac
acgtttgaccttgaacacctggagatgagatcactggctcagttcagttacctggaacct
ggcagcgtgcgtcacatctacctgtaccaccacagccaaggacacaaggcgctgttcggc
ctcttcattccgtctcaacgcaaggccagcgtgtttgtgctcgacacggtgcgcagtaac
cagatgcccaacctgagcactctgtacggggcggagcgcaccgctctgctggagaagacc
agcgaggacctgctgccgccagagaagcaccagttcgaggtgcgcgccgagaacgaccca
aaggccatctacagagctgtgcagcgcatcctcctcaactacaaggaggagcggcgtggc
cccaccctgatcgcggtgcagtccaactgggagctgcggcggctggcggcgggcatggcg
gtgctggaggagttcccggtggtgccggtgcacgtggtggacgagatcagctacagcgtg
ctggactggcagcgccacggcgcccgccgcatgatcagacactacctcaacctcgacagc
tgcctctcgcaggccttcgacatggcacggtactaccacctgcctgtgggcaacctgcca
caggacgtgtccatcttcggctcggacctgttcctggcgcgccacctgcgcaagcacaac
cacctactgtggctctcgcccacgacccggcccgacctggggggcaaggaggccgacgac
agcaggctggtgatggagagcgacgaccgcgcctcggtggagatcaacagccagggctgc
tactctacagtgtgtgtggagctggacattcagagtctggcggtcaacaccattctgcag
tcccagcacgtcaacgacatggagggcggggccagcatgggcgtcagcttcgacgtcatc
cagcacgcctccctggaggagatgatgtcgggcaaccaggccgcccccgccgtggccagc
tatgacgagacggcgctctgctccaacaccttcaggatcctgaagagcatggttgttggc
tgggtgcgtgagatcacacagtaccacaacgtctacgcagataaccaggtgatgcacttc
taccgctggctgcgatcgcccaactctctgctctacgacccggccctgcaccgcaccctg
aacaacatgatgaagaagatcttcctgcaattggttgcggagttcaagcggcttggctcc
tctgtagtctacggcaacttcaatcggatcatcctctgcaccaaaaaacggcgcattgac
gacgccatcgcttatgtggagtacatcaccaacagcattcactcccgggagatcttccac
tccctctcgctcaccttctcgcgctgctgggagttcctgctgtggatggatccagccaac
catggaggggtgaagggcaagctgccctccagcatcctctgcggagaggatggtggtggt
aagaagaaaaaggaaaaagcggagggggaggaggaaggaagtgaggaagaggaggaggag
gaggatgaagaggaggtgggtgatggggaagaggatgttgaggacctgattgagagcaac
tggaacatcatgcagtatctcccccaaacggcatcctgtcagaagtactacctgatgatc
atctcggcctatattgcagctgtctatcacagcatgagggaggagcttcggcggaacgct
cccgggaccacgcccatcaagaggcgcggtggaagccaggcctctcagcaggcagcaggg
gacagcaactccctacctggcatgatcagcttctctcaggagtacgtctccggcgagctg
acccagaacttcttcaccatcacccagaagatccagaagaaggtgatgggcacgcgcaac
atgaccctgccctccgagatgttccccgtcctgcccggctcccacctgcccctcaacaac
cccgccctggagttcatcaaatacgtctgccaggtgctgtcgttggatggcaacatcgtg
aaccaggtgaacaagctgaagcgagacctgctgaggctggtggacgtgggcgagttctcc
gacgacgcccagttccgtgacccgtgccactcgtacgtcctgccagaggtcatctgccac
cactgcaacttctgccgtgaccttgacctgtgcaaggacccctccatggcacaggatggc
agtgttctgccacagtggttctgctccaactgccaggcccagtacgagacggactccatc
gagatggcgctggtggaggccctgcagaagaagctgatgagcttcaccctgcaggacctg
gagtgtgccaagtgcaaaggagtgaaggaggccaacatgcctctgtactgccgctgcgct
ggcgatttcaaactcactttctcaaccaagagcttctccgagcagataagagtgttccgg
aacattgcggatcattacaagatgggcttcctgcaggagaccatcgactggctgcttctc
atgagcccccagttggcctaa
DBGET
integrated database retrieval system
