Sardina pilchardus (sardine): 134088920
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Entry
134088920 CDS
T10667
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
spil Sardina pilchardus (sardine)
Brite
Ribosome biogenesis [BR:
spil03009
]
Eukaryotic type
90S particles
Other 90S particles
134088920 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134088920
NCBI-ProteinID:
XP_062399126
LinkDB
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Position
1:complement(34972316..35006642)
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AA seq
1828 aa
AA seq
DB search
MASIEEDFPRGGTVKTTQPTKTDKAHVEVDNLFETRAPEVKKKRKSTNQQDEEQDVKKGK
KAKDDSLKLNTASSVDILHMKDLKVGTLLLACAKEVNDFEIVVGLPSGLTGYLPVTNICE
SYNKLLSDKLDSGENVEDFASLPHLFSPGRVIRCVVSSLVESREGHVSLKVSINPKEVNK
ALTSGSLKAGMTISGCVESIEDHGYLIDIGLSGTKAFLPKPSAKAAKQELMLGQYVDCLL
EEVKNEGRLVRLSVDPAAVSEAVADADQGWTLSNLCPGLLVNAKIKKVTVHGLILEFLSS
FSGVVDFMHIDPDKVSSYKNGDEVLARVLYVEPSTRQVGLSLREHLLPPGGSALESVQSE
RVGEVLQGCKVAAVHFHSGAILELPDGTKAFGHKNQLKEPKEPFNPSHLQAQPELTCRIT
DFSPLEQLHLVSLRKSTIEAPFFRYNDLKAGQIVEGTIVSLARFGLFVKVTDHIKGMVPR
IHMADVTLTNPEKKFTVGNKIKCRVLSVDVASRKLALTRKKGMVDSPLRVFATYADARVG
RIAHGFVVCVKEFGCIVRFYGDVKGLVPLRELSTEHVMFPQQLFYVGQVVKAKVLQCDVE
NEKLLLSFRAVLEGETEGQGQTNKPVFKFEIGKSVEARVVSKVPDGLNLAILPEEAPAHL
PTAHLSDHASNSPLLWEALQVGDVVSDAVCLSKTKLNVILTKKPLVRACLERGAAATEFS
GLRLGLELTGWVKNVMPYGVFVEFPHGLYGLAPKAAMSDRFVESTEGVFQAGRTVRAKVT
NLDEEKRRFLVSLKASELSSAEDEGQEMLTRGLREKTAAMEMIGGRVGADALQQLSSLAV
GSRLKVTVDDLLEDGSCSFSSDDLPAVSILASEHHLAGVTVTSGQKVKAVVLQVDPRTPQ
VHVSLLPALLSKRKTLESGSKHEAQILHIDGDFAVVSIGDTAHVTVVPLIAHLNETFGGE
AERPKAGDTLRGQVVVVELASEALNGLALVSREAGLGVSAKPPPSAAAVAATARRERTIS
EGRGSLHSFRCGDVVTAVVSAIKPMQVRLTLPGDVTGCAHVSELLEDPEAGSFPTSAVKV
GQEVRARVIGGRDVLSHKFLPISHPGFVYSQPVLSLLPRKVKEAVDPKALAAGVKMDELV
PGQDLICYASKYISAIKCLEVAVTPKINGTVELLAMTTNVKEAKRPEKLVKVGQAMKAKV
VSVSTQPKRLFLSLTGTHTLSPGNVVIASVQEVKPCVGLLLKLPFGGKGSASILDLSDSY
APNPLQQYSQDQLVRCCILEAGEKNKYHVSLRPSRTHPDKKLPITDAELSSLEDLKESQV
LQGYVAAVGDKGIFVRLSRTITGRVEYKKATNYYVKDHSLYSKHIPQNTLLTVKVLSLNS
ENSHVELSTLPGDTGKADLLPESLHLPLRKRLEKKTKRKRKISESTVVEEAPVEKKKKKK
KKKPNTEDNDSGVEVYFREEDTESAEKAPAKVPASKSPAGPARLKVSAGFSWDTTLSSLR
PAAAAPDHQSSAEEEEEEEQPAEKKTQKKTRKAQEAESKREEEELRQQEAELMDPAQRPQ
SAHAFERLLLASPDSSLVWLQYMAFHLQATEIEQARAVAERALKTISFREEQEKLNVWVA
LMNLENMYGGEESLHKVFERAVQYCEPMPVYQRLAHIYAQSNKIKEAEDMYKSMVKRFRQ
EPSVWQSYGTFLVRQGQSDAANALLQRALKSLSNKQHVDLITKFARLEFQHGDKDRGKAM
FDKVLTSYPKRTDLWSVFIDLMIKHGNQQEVRELFDRVIHLSVAVKRIKFFFKRYLEYEK
KNGTPETIQAVKQKALEYVESKGGEDAS
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgatagaggaggatttcccccgtggtggtacagtgaagaccacgcagccgacc
aagactgataaagctcatgtggaagtggacaacctatttgagactcgtgctcctgaggtt
aagaaaaaaagaaagtctaccaatcaacaggatgaagagcaagatgtcaagaagggcaag
aaggctaaagatgactccctgaagctcaatactgcatccagtgtagacatcctgcatatg
aaagatctcaaagttggcaccttgttgctggcttgtgccaaggaagtgaatgattttgag
atcgtggtcggactccccagcggcctgaccggatacctgcccgtgaccaacatctgtgaa
tcctacaacaagttgctcagtgacaagctggacagtggagaaaatgtggaggattttgcc
tctctccctcacctcttcagccctggccgtgtgatcaggtgtgttgtgtcctctttggtg
gaatccagagaaggccatgtgagcctcaaggtgtccatcaaccccaaagaggtcaacaaa
gcgttgacctctggctcactgaaggctggcatgaccatcagtggttgtgtggagagcatc
gaggaccatggctacctcattgatattggcctcagtgggactaaagcttttcttcccaag
ccatcagcaaaggccgcaaaacaagagctcatgctcggacagtacgtcgactgtctgctg
gaggaggtgaagaacgagggtcgtctggtgcgcctctccgtggacccggccgccgtctcc
gaggccgtcgccgacgccgaccaaggctggaccctgagcaacctgtgtccaggcctgctg
gtcaatgccaagatcaagaaggtgaccgttcatggactcatcctggagttcctctcctcc
ttctccggcgtggtggacttcatgcacattgacccagacaaggtctcctcctacaagaat
ggggatgaagtgctggcgcgggtcctgtacgtggagccctccacccggcaggtgggcctg
tccctgcgcgagcacctcctgccaccagggggcagcgctctggagagcgtgcagagcgag
cgcgtgggcgaggtgctgcagggctgcaaggtggcggccgtgcacttccactcgggcgcc
atcctggagctgcccgacggcaccaaggcgtttggacacaagaaccagctgaaggagccc
aaggagccgtttaacccgagccacctgcaggctcaaccggagctcacctgccgcatcacc
gacttcagccccctggagcagctgcacctggtcagcctccgcaagagtaccatcgaggcc
cccttcttcagatacaatgacctgaaggccggacaaatagtagagggtaccatcgtgagc
ttggcgcgcttcggcctgtttgtgaaggtgacggatcacatcaaaggcatggtgccacgc
atccacatggccgacgtcaccctcaccaaccccgagaagaagttcaccgtgggcaacaaa
atcaaatgcagggtgttgtcagtggacgtggcgagcaggaagttggcgctgacgcgcaag
aagggcatggtggactcgcccctgcgggtgttcgccacgtacgcagacgcccgcgtgggc
cgcatcgctcacggcttcgtggtctgcgtcaaggagtttggctgcatcgtgcgtttctat
ggcgacgtgaagggcctggtgccgctgcgcgagctgagcaccgagcacgtgatgttcccg
cagcagctcttctacgtcggacaggtggtgaaggccaaggtgctgcagtgtgacgtggag
aacgagaagctgctgctgtccttccgggccgtgctggagggggagacggagggccagggc
cagaccaacaagcccgtcttcaaattcgagatcggaaagagtgtggaggcgcgtgtggtc
agcaaggtccccgacgggctgaacttggccatcctccccgaggaggcgcccgctcacctg
cccacggcgcacctgtcggaccacgcctccaacagcccgctgctctgggaggctctgcag
gtgggcgacgtcgtctccgacgccgtgtgtctcagcaagaccaagctgaacgttatcctg
accaagaagcccctggtgagggcgtgtctggagcgcggtgcggccgccaccgagttctcg
ggcctgcgtctgggcctggagctgacgggctgggtgaagaacgtcatgccctacggcgtc
ttcgtcgagttcccccacggactctacggcctcgcccccaaagcggccatgagcgaccgg
ttcgtggagtccacggagggcgtgttccaggcgggccggacggtgcgcgccaaggtgacc
aacctggacgaggagaagcggcgcttcctggtgagcctgaaggcgtcggagctgagcagc
gcggaggacgaggggcaggagatgctgaccagaggactccgagagaagacggccgccatg
gagatgatcggcgggagagttggcgcggatgcgttgcagcagctgtcgtcgttagccgtg
ggcagcaggctgaaggtgacggtggacgacctgttggaggacggctcctgctccttctcc
tcagacgacctcccggccgtctccatcttggcctccgagcaccacctggccggtgtgacg
gtgacctctgggcagaaggtaaaggcggtggtgttacaggtggaccccaggaccccgcag
gtgcacgtctctctgctgcctgccctgctcagcaagaggaaaacgttggagagtgggtca
aagcacgaagctcagatacttcacatcgacggtgactttgccgtggtttccatcggcgac
acagcccacgtgaccgtcgtcccgctgatcgcccacctcaacgagaccttcggcggcgaa
gcggaacggccgaaggccggcgacaccctgaggggacaggtcgttgtcgtcgagctcgcc
agcgaggcgctgaacggccttgcgctcgtgagccgcgaggccgggctcggggtcagcgcc
aagccgcctccctcggccgccgccgtcgccgccaccgcccggcgcgagaggacgatatcg
gagggccgcggctcgctgcacagcttccgctgcggggatgtggtcactgctgtggtcagc
gccatcaagcccatgcaggtgcgcctgaccttacctggggacgtgacgggctgtgcccac
gtgtcggagcttctggaggaccccgaggcgggctcgttccccaccagcgccgtgaaggtg
ggccaggaggtgcgggcgcgcgtcatcgggggccgggacgtcctcagccacaagttcctg
ccgatctcccaccccggctttgtctactcccagccggtcctgtcgctgcttccgaggaag
gtgaaggaggcggtggaccccaaagccctggcggccggagtcaagatggacgagctcgtg
cctggccaggacctcatctgctacgcctccaagtatatttcagccataaagtgtctggag
gtcgcggtgaccccaaagatcaacggcaccgtggaactgttggccatgaccaccaatgtc
aaggaggccaagaggccagagaagctggtgaaggtgggccaggccatgaaggccaaggtg
gtgtccgtgtccacccagcccaagcgcctcttcctctccctcaccgggacacacacgctg
tcgccggggaacgtcgtcatagcgtccgtgcaggaggtgaaaccgtgtgtgggcctgctg
ctcaagctgccgttcgggggcaagggctcggcgtccatcttggacctgtcggacagctac
gcgcccaacccactccagcagtacagccaggaccagctggtcaggtgctgcattcttgag
gccggtgagaagaataagtaccacgtgtcgctcagaccctcaaggactcacccggataag
aagctgccaatcacagacgctgagttgtcgtctttagaggacctgaaggagagccaggtc
ctccagggctacgtggccgccgtaggggacaagggcatttttgtcaggttatcaaggacc
atcacggggagagtggagtacaagaaggcgaccaactattatgtgaaggatcacagtctc
tactccaaacatatccctcaaaacacgctactcaccgtcaaagttctgagtttgaatagc
gagaacagccatgtggagctgtccacgcttccaggggacactgggaaagcagacctcctc
cccgagtccctacatctgccactcaggaagcggctggagaagaagacaaagaggaaaagg
aagatatcagagagtacagtggtggaggaagcacctgtggaaaagaagaagaagaagaag
aagaagaagcccaacaccgaggacaacgacagcggggtggaggtgtacttcagagaggag
gacacggagtccgctgagaaggctccagccaaggttccggcgtccaagagccccgcaggc
ccagcgcggttgaaggtgtccgcgggcttctcctgggacaccaccctcagctcgctccgg
cccgccgcggccgcccccgaccaccagtccagcgccgaggaggaggaggaggaagagcag
cccgcggagaagaagactcagaagaagacgcgcaaggcgcaggaggcggagtccaagcgc
gaggaggaggagctccgtcagcaggaggcggagctgatggacccggcgcagcgtccccag
agtgcccacgcgttcgagcgcctcctgctggcctcgcccgacagctcgctggtctggctc
cagtacatggccttccacctgcaggccaccgagatcgagcaggcgcgcgccgtggccgaa
cgcgccctcaagaccatctccttcagggaggagcaggagaagctgaacgtgtgggtggcc
ctgatgaacctggagaacatgtacggcggcgaggagagcctgcacaaggtgtttgagcgc
gccgtgcagtactgcgagcccatgcccgtctaccagcgcctcgcccacatctacgcccag
tccaacaagatcaaggaggcggaggacatgtacaagagcatggtgaagcgcttccgccag
gagccgtccgtgtggcagagctacggcaccttcctggtgcgccagggccagagcgacgcc
gccaacgccctcctgcagagggcgctcaagagcctgtccaacaaacagcacgtggacctg
atcaccaaattcgctcgtttggagttccagcacggagataaggatcggggcaaggccatg
ttcgacaaggtcctgaccagctaccccaaacgcaccgacctctggtccgtcttcattgac
ctgatgatcaagcacggcaaccaacaggaagttagggagctgtttgaccgcgtgatccac
ctgagcgtggcggtcaagaggatcaagttcttcttcaagcgctacctggagtacgagaag
aagaacggcacgcccgagaccatccaggcggtcaagcagaaggccctggagtacgtggag
tcaaaaggaggcgaagacgccagctag
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integrated database retrieval system
