Sardina pilchardus (sardine): 134088954
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Entry
134088954 CDS
T10667
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134088954 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spil03021
]
134088954 (taf5)
03036 Chromosome and associated proteins [BR:
spil03036
]
134088954 (taf5)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134088954 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
134088954 (taf5)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
134088954 (taf5)
STAGA complex
134088954 (taf5)
TFTC complex
134088954 (taf5)
SAGA complex
134088954 (taf5)
SLIK complex
134088954 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_DCAF12
WD_LRWD1
PEP5_VPS11_N
Beta-prop_IP5PC_F
PROPPIN
LisH_PAC1
eIF2A
VPS8_N
LisH_TPL
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
134088954
NCBI-ProteinID:
XP_062399170
LinkDB
All DBs
Position
1:complement(35008061..35018050)
Genome browser
AA seq
754 aa
AA seq
DB search
MAAVQDGPIESESDTETKTDALSDGAGNITGSSTGALSSPPNAASSATGTSKSMAPPGPE
NQQTLLAVLQYLKKNNLLESVDILRREAGLSDDGGDSPDAEGSGGSDPAVKVGEGGDANS
LLNRVSIATAAPVVVAAPAPSKASGGESQPDVNVVLSAYSQQGDPALYDTYYTGLKNFIE
SVLDCHRAELSQLFYPLFVHMYLELVYNSHEQEAKAFFDKFGGDQECYYADDLRVLSSVS
KREHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMP
RAKSQIDAMSGALAGEARREANKGKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPK
KDSMGNKSKKQDPNAPQQARIPLPELKDSDKLDKIMNMKEATKRIRLSPENLPSICFYSF
LNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLNMIDKESDDVLER
IMDDKSASEAKVMYGHSGPVYGISFSSDRNYLLSSSEDGTVRLWSLQTYTCLVGYKGHNY
PVWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGS
ADRTVRMWDVLNGNCVRILTGHKGPIHCLTFSPNGKFLASGATDGRVLLWDIGHGLMIGE
LKGHTDTIYSLRFSRDGEILASASMDNTVRLWNASKAFDDVETDDFTATTGHIHLPDNSQ
ELLLGTYMTKSTPVVHLHFTRRNLLLAAGAYNPQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatgggccgattgagtcggagagtgatacagaaacaaagacagat
gcattgagcgatggcgctggaaatatcacgggtagttcgacgggagcgctgtcttcgccg
cccaatgcagcatcctcagctaccggcacctcgaaatccatggcgccgcctggacccgag
aaccagcaaacattgctagctgttctccagtatctcaagaaaaacaacttgttggaatcg
gtggatattttgcgtcgagaagcaggtttatcggacgatggaggagactctccggacgct
gaagggtctggtggatcagaccctgcagtgaaagttggcgaaggtggggatgcaaactcc
ctcctaaaccgagtatcgatcgcaaccgcagcccccgtagtcgttgctgctccggcgcca
tccaaagctagcggaggggagtcccagccagacgtaaatgttgtcctgtcggcatacagt
cagcagggggacccagccctgtatgacacctattacaccggcctgaagaacttcatagaa
tctgtattggattgccaccgagccgagctctctcagcttttctacccgcttttcgttcac
atgtacctggagctggtctacaacagccatgagcaggaagctaaagcgttttttgataag
ttcggcggcgaccaggagtgctactacgcggacgacctgcgcgtgctctccagcgtcagc
aagcgcgagcacatgcgcggcaacgagacgctgttggacttccgcaccagcaagttcgtg
ctgcgcatctcgcgcgactcctaccagctgctcaagcggcacctgcaggagcggcagaac
aaccagatctggaacatcatccaggagcacctgtacatcgacatcttcgacggcatgccg
cgcgccaagagccagatcgacgccatgtccggggcgctggccggcgaggcccgcagggag
gccaacaagggcaaggtgttctacggcctccttaaagagccggagatcgaggtgcctttg
gacgacgaggacgaggaggctgagaacgaggaaggcaaacccaagaagaagaagcccaag
aaggacagcatgggcaacaagagcaagaagcaggaccccaacgcccctcagcaggccaga
atccccctaccggagctgaaagactcggacaagctggacaagatcatgaacatgaaggag
gctaccaaacgcatccgtctgagtcccgaaaacctgccctccatctgcttctactctttc
ctcaatgcctatcagggtctgaccgcagtggacttcacagacgactccagtctcattgca
ggggggtttgctgactccacggtccgagtgtggagtgtcaccccgaaaaaactacggaga
gtcaagtctgcagctgacctgaatatgatcgataaagagtccgacgacgtgctggaacgc
atcatggacgataagtcggcgagcgaggccaaggtcatgtacggtcacagtggaccggtc
tacgggatcagcttcagctctgacaggaactacctgttgtccagctcggaggatggcaca
gtgaggctgtggagtctgcagacctacacgtgtttagtgggctacaagggacacaactac
cccgtttgggacacgcagttctctccgtacggctactacttcatctcaggaggacacgac
cgagtggctcggctgtgggccacggaccactaccagcctctgcgaatattcgcaggtcac
ctggctgacgtcacctgtactcgctttcaccccaactcaaactacgtggccacaggttcg
gccgaccgcaccgttcgcatgtgggacgtcctgaacggcaactgcgtccgcattctcacc
ggacacaaggggcccattcactgcctgaccttctctccgaacgggaagttcctggcgtcg
ggggccacggacggccgagtgctgctgtgggacatcggccacggcctgatgatcggggag
ctgaagggccacaccgacaccatctactccctcagattcagccgcgacggggagatcctc
gcctcagcttccatggacaacacagttcgcctgtggaacgcctcgaaggcgttcgacgac
gtggagacggacgacttcaccgcgaccacgggtcacatccacctgcccgacaactcccag
gagctcctgctaggcacctacatgaccaagtccacgcccgtcgtccacctacacttcaca
cgccgcaacctccttctggccgcaggggcctacaaccctcaatga
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integrated database retrieval system
