Sardina pilchardus (sardine): 134089184
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Entry
134089184 CDS
T10667
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134089184 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134089184 (snrnp200)
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134089184 (snrnp200)
Spliceosome [BR:
spil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134089184 (snrnp200)
Complex C
U5 SnRNP specific factors
134089184 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
DrmE_N
Motif
Other DBs
NCBI-GeneID:
134089184
NCBI-ProteinID:
XP_062399521
LinkDB
All DBs
Position
8:complement(29574192..29598137)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PSMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKSDKMRDKERRREVEQLLGVTDDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDEGSDEDSEGEEADIGNAL
SANLGATGDVMSAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVQLLGFNTFDFIRVLRQHRRMILYCTMLASAQSEAERDRIISKMEADQDLSRVL
YQLQETEKEDIIREERSRRERVRKSRVDDLESMDVDHGQSVAPRQMLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDDEVLVNVDKIPKYSQAAFEGFKSLN
RIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMIREIGKHINMDGTINTDDFKIIYIA
PMRSLVQEMVGSFGKRLASYGIVVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGD
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLN
AEVVLGNVQTTKDAVNWLGYTYLYVRMLRNPTLYGISHDDRSSDPLLERRRMDLIHTAAT
VLEKNNLVKYDKRSGSFQVTDLGRIASHFYITHDSIMTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YITQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWLSMSPLRQFRKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYLHQFPKLDLAVHIQPITRSTLKVEL
TITPDFQWDDKVHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLLLPEKYPPPTELLDLQPLPVTALRNAAFESLYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIIDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLANAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVTPQRFLHCTEKDLTPFLEKLSDLTLKETLSNGVGYLHE
GLSAGERRIVEQLFNSGAVQVVVVSRSLCWGTNISAHLVVVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDALLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTTDHIKRCGDKGVESI
FDIMELEDDERNALLQLSDGQMADVARFCNRYPNIELSYEVADKDIVKSGGPVLVLVQLE
REEEVTGPVIAPFFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVQGVH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSEGESDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcccgtagcttgcagtacgagtacaaagcgaactctaatttggtc
ttgcaagcggaccgttcgctgatcgatcgcacacgtcgcgatgagcccaccggagaggtc
ctgtcgctcgtggggaagctggagggcacgaagatgggggacaaggctcagaggaccaag
ccgtccatgctggaggagagacgcgcaaagcggaggaagcgagatgaggatcgtcacgac
atcaacaagatgaagggcttcacactgctgtcggagggcatcgacgacatggtgggcatc
gtctacaaacccaagacaaaggagaccagagagacatacgagatcctgctcagcttcatc
caggctgcgctcggagaccagccccgtgacatcctgtgcggagcggccgacgaggtcctg
gccgtgctgaagagcgacaagatgcgggacaaggagcggcggcgcgaggtggagcagctg
ctgggcgtcaccgacgacacacgctaccacgtgctggtcaacctgggcaagaagatctcc
gactacggaggggacaaggagctccagaacatggatgataatattgatgagacatacgga
gtcaacgtgcagtttgagtccgatgaagaggagggtgatgaggatcagtacggggaagtg
agggatgaaggctccgacgaagacagcgagggagaggaggctgacatcggcaacgcactg
tctgctaatctgggcgctaccggtgacgtgatgagcgctaagaagaaggatctgcacccg
cgtgacatcgacgccttctggctccagagacagctgagccgtttctatgatgatgccatc
gtgtcccagaagaaggctgacgaggtgttggagatcctgaagacggccagtgatgaccga
gagtgtgagaaccagctggtgcagctgttgggcttcaacacgtttgatttcatcagagtc
ctgcgccagcacagacgcatgatcctgtactgcaccatgctggccagtgctcagagcgag
gcggagcgggaccgcatcatcagcaagatggaggccgaccaggacctgtccagagtgctc
taccagctgcaggagaccgagaaggaggacatcatccgggaggagaggtctcgcagagag
agggtgaggaagtctcgagtggacgacctggagtctatggatgtcgaccatggacagtct
gtggccccacggcagatgttggacctggaggacctgaccttcacccagggaagccacttc
atggccaacaagcgctgccagctgccggacggatccttccggaaacagcgcaagggctac
gaggaggtgcacgtgccagcgctcaagcccaaaccctttggcgatgacgaggtgctggta
aatgtcgataagataccaaagtactcccaggctgcctttgagggattcaaaagcctgaac
cgcattcagagcaaactcttcaagactgccatggagaccgatgaaaacctgctagtgtgt
gctcccactggtgcgggtaagaccaacgtggcgctgatggccatgatccgtgagatcggg
aagcacatcaacatggacggcaccatcaacacggacgacttcaagatcatctacatcgcc
cccatgcgctccctggtgcaggagatggtgggcagcttcggcaagcgtttggcgagttac
ggcatcgttgtgtccgagttgaccggtgaccaccagctgtgtaaggaagagatcaacgcc
acgcagatcatcgtgtgcacgccggagaagtgggacatcatcacacgcaagggcggggat
cgcacatacacacaactcgtgcgcctcatcatcattgatgagatccacctgctgcacgat
gaccgtgggccggtgctggagtctctgatagcgaggaccatccgtaacgtggagctgacg
caggaggacgtgcgcctcatcggcctcagcgccacgctgcccaactacgaggacgtcgcc
acctgcctgcgcgtcgaccccgccaagggcctcttctacttcgacaacagtttccgtcct
gtgcctctggagcagacctacgtgggcatcacggagaagaaggccatcaagcgcttccag
atcatgaacgagatcgtctacgagaagatcatggagcacgccggcaagaaccaggtgctg
gtgtttgtgcactcgcgtaaggagacgggcaagacggcgcgggcgatcagggacatgtgt
ctggagaaggacacactggggctcttcctacgagagggctccgcctccactgaggtgctg
cgcactgaggccgagcagtgcaagaatctggagctgaaggacctgctgccgtatggcttt
gctatccaccacgccggtatgaccagagtggacagaaccctggtggaggatctgtttgct
gaccgccacatccaggtgctggtgtcaacagccactctggcctggggtgtgaacttgcct
gctcacacggtcatcatcaaaggtacgcaggtgtacagcccagagaagggccgctggaca
gagcttggggccctggacatcctgcagatgttgggtcgtgcgggccgcccccagtacgat
acgaagggcgagggcatcctgatcacgtcccacggggagctgcagtactacctgtcgctg
ctcaaccagcagctgcccatcgagagccagatggtggccaagctgcccgacatgctcaac
gcagaggtggtgctgggcaacgtgcagaccaccaaggatgcagtgaactggctgggctac
acctacctgtacgtgcgcatgctgcggaaccccacgctgtacggcatctcccatgacgac
cgcagcagcgacccgttgctggagcgacggcgcatggacctgatccacacggccgccacc
gtgctggagaagaacaacctcgtcaagtacgacaagaggagcggctccttccaggtgacg
gacctgggccgcattgccagtcacttctacatcacccacgactccatcatgacctacaac
cagctgctgaagcccaccctgagcgagatcgagctcttccgcgtcttctcactctcctcc
gagttcaggaatatcactgtcagagaggaagagaagctggagctgcagaagctgctggaa
agagtgcccatccctgtcaaggagagtatcgaggagcccagcgctaagatcaatgtgttg
ctgcaggcctacatctctcagctgaagctggagggcttcgccttgatggccgacatggtg
tacatcacacagagtgctggtcgtctcatgagggccatctttgagatcgtgctgagcaga
ggctgggcccagttgactgacaagaccatgaacctctgcaagatgatcgacaagagaatg
tggctgtccatgtctcctctgcgccagttccggaagcttccagaggaagtcatcaagaag
attgagaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagattggt
gagctgatccgtatgcctaagatggggaagaccatccacaagtacctgcaccagttcccc
aagctggacctggctgttcacatccagccaatcacacgctccacactcaaagtagagctg
accatcacgcctgacttccagtgggacgacaaggtgcacggctcgtcggaggcgttctgg
atcctggtggaggacgtggacagcgaggtggtgctgcatcacgagtacttcctgctcaag
gccaagtacgcgcaggacgagcacctggtcaccttcttcgtgcccgtcttcgaaccgctg
cccccgcagtacttcatccgcgtggtgtccgaccgctggctctcgtgcgagacgcagctc
ccggtgtcgttccgtcacctgctgctgccggagaagtaccctccccccacagagctgctg
gacctgcagcctctccccgtcactgccctccgtaacgccgccttcgagagcctctaccag
aacaagttccccttcttcaaccccatacagacacaagtgtttaacgcggtgtacaacagc
gatgataacgtgtttgtgggcgcccccactggcagtgggaagaccatctgtgctgagttc
gccatcctcaggatgctgctgcacaacgcagagggccgctgtgtctacatcacacctatg
gaggccctcgctgaacaggtgtttgtggactggcatcagaagttccaggacgcgctgaac
aagaaggtggttctgctgacgggcgagaccagcacggacctgaagctgctgggcaagggc
gacatcatcgtgtccacgcccgacaagtgggacatcctgtcccgccgctggaagcagagg
aagaacgtgcagaacgtcagcctcttcatcatcgacgagacgcacctcatcgggggagag
aacgggccggtgttggaggtgatctgctctcgtatgcgctacatctcgtcccagatcgag
cgtccgatccgcatcgtggcgctgagctcgtcgctggccaacgccaaggacgtggcccac
tggctgggctgcagcaccaccgccaccttcaacttccaccccaacgtcaggcctgtaccg
ctggagctgcacatccagggcttcaacgtgagccacacacagacgcgtctgctgtccatg
gccaagcccgtgtaccacgccatcatgaagcactcgcccagcaaaccggccgtggtgttc
gtgccctcacgccgccagacccgcctcaccgccatcgacatcctcaccttctgcgccgcc
gacgtcacacctcagaggttcctgcactgtacggagaaggacctgacgcccttcctggag
aagctgagtgatttgacgctgaaggagaccctgtccaacggcgtgggctacctgcacgag
ggcctctctgctggggaacgcaggattgtagaacagctcttcaactccggtgctgtccag
gtggtcgtggtatctcgctccctctgttggggtaccaacatctccgcgcacttagtcgtt
gtcatggatacccagtactacaacggcaaaatccatgcctacgtggactatcccatctat
gacgtcctccagatggtggggaaggccaatcgccccctgctggacgatgaggggcgctgc
gtcattatgtgccagggctccaagaaggacttctttaagaagttcctgtatgagcccctg
ccggtggagtctcacctggaccactgtctccacgaccacttcaacgccgagatcgtgacc
aagaccatcgagaacaagcaggacgccgtggactacctcacctggacgttcctctaccga
cgcatgacccagaaccccaactactacaacctgcagggcatgtcccatcgtcacctgtcg
gaccacctgtcggagctggtggagaacacgctgcaggacctggagcagtccaagtgcatc
agcatcgaggacgagatggacgtggcgccactcaacctgggcatgatcgccgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtctctgaatgccaagacgaagatc
cgtgggctgattgagatcatctccaacgccgctgagtacaagaacattcccatcaggcac
catgaggacgcgctgctcagacagctggcacagaaggtgcctcacaagctgaccaacccc
aagttcaacgacccgcacgtgaagaccaacctgctgctccaggcccacctgtcccgcatg
cagctgagcgcagagctgcagtccgacaccgaggacatcctcagcaaggcggtgcgtctg
atccaggcctgtgtggacgtgctgtccagtaacggctggctgagcccagcgctggcggct
atggagctggcccagatggtcacccaggccatgtggtccaaggactcgtacctcaagcag
ctgcccttcttcaccacggaccacatcaagagatgcggcgacaagggcgtggagagcatc
ttcgacatcatggagctggaggacgacgagcgtaacgcgctgctgcagctgtcggacggc
cagatggccgacgtggcgcgcttctgcaaccgctaccccaacatcgagctctcctacgag
gtggccgacaaggacatcgtcaagagtggtggtccagttctggtgctggtgcagctggag
agagaggaggaggtgactggtccagtcattgcaccattcttccctcagaaacgtgaggaa
ggctggtgggtggtgatcggagaccccaagtccaacagtctgatctccatcaagaggctc
acactgcaacagaaggccaaggtgaagctggacttcgtggcaccagtccagggcgtccac
aactacacgctctacttcatgagcgacgcctacatgggctgtgaccaggagtacaagttc
agcgtggacgtcaaggaggccgacagcgagggcgagagcgactccgactga
DBGET
integrated database retrieval system
