Sardina pilchardus (sardine): 134089227
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Entry
134089227 CDS
T10667
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134089227 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134089227 (usp39)
Spliceosome [BR:
spil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
134089227 (usp39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
134089227
NCBI-ProteinID:
XP_062399594
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Position
8:complement(31466341..31472772)
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AA seq
496 aa
AA seq
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MATIKRERDIDEDDDDVPVKVGRGHDVEDKRSRHCPYLDTINRSVLDFDFEKLCSISLSH
INVYACLVCGKYFQGRGQKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDIT
YVLKPTFTRQHIGGLDKQGRLYRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLR
NYFLEEENYREIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKN
FQITKQGDSVDFLSWFLNALHGALGGTKKKPSIITKVFQGSMRIFSKKLPHPDLPPEEKE
ALLLTDDYQEVMSEAPFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILTKFNGNTEKEYK
TYKENFLKRFQLIRLPPYLIFYIKRFTKNNFFVEKNPTIVNFPITSVDLREYLTEEAQAT
EKHTTYDLIANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQI
WKRRQSEEDEDSHTGA
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccataaagcgtgaacgtgacattgacgaagacgacgatgatgtacctgtaaaa
gtgggtcgagggcatgatgtcgaggacaagaggagtcgccactgcccctaccttgacacc
atcaacaggagtgttttggacttcgactttgagaagctgtgctccatttcgttgtcccac
ataaatgtgtatgcctgtctagtttgtgggaagtatttccaggggagaggacagaagtct
cacgcctacacacacagtgtacagttcactcaccatgtattcctaaatctgcacacactc
aaattctactgtctgcctgacaattacgagatcattgactcttcgctagaagatatcacg
tacgtgctgaagcccacatttactcgccagcatattggcggactggacaagcagggccgt
ctctaccgtgcctacgatggcacaacctatctgcctggcattgtggggctcaacaacatc
aaagccaatgactatgccaatgcagtgctacaggccctgtctaatgtacctcccctgagg
aactacttcctggaggaggagaactaccgcgagattcgccggcccccgggcgacatcatg
ttcctgctggtgcagcgcttcggggagctgatgaggaagctgtggaacccgcgcaacttc
aaggcccacgtctcgccccacgagatgctgcaggctgtggtgctctgctccaagaagaac
ttccagatcaccaaacagggggattctgtggacttcctgtcttggttcctcaatgctctg
catggtgctttgggtggcaccaagaagaaaccatccatcatcacaaaagtgttccagggc
tccatgcggatcttctctaagaaactgcctcatcctgacctgcccccagaggagaaagag
gccctcctgctgactgatgactaccaggaagtgatgagcgaggctccgttcctctacctg
acccttgacctccccaccgcaccgctctacaaggacgagaaagagcagctcatcatccca
caggtccccctcttcaacatcctcaccaagttcaacggcaacacagagaaggagtataag
acgtacaaggagaacttcctgaagcgtttccagctgattcggctgcccccatacctcatc
ttctacatcaagaggttcaccaagaacaacttctttgtggagaagaaccccaccattgtg
aacttccccatcacgagtgtggacctgcgtgagtatctgaccgaagaggcccaggctaca
gagaaacacaccacctatgacctcatagccaacgtggtgcatgatgggaaacccacagaa
ggatcctacaggatccacgttttacatcatggcacagggaaatggtatgagcttcaggat
ctacaggtcacagatattcttccccagatgatcacgttgtctgaggcgtacatacagatc
tggaagaggagacagagtgaagaggacgaggacagtcacacaggagcctaa
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