KEGG   Sardina pilchardus (sardine): 134089879
Entry
134089879         CDS       T10667                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    134089879 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spil03021]
    134089879 (taf5l)
   03036 Chromosome and associated proteins [BR:spil03036]
    134089879 (taf5l)
Transcription machinery [BR:spil03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     134089879 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     134089879 (taf5l)
Chromosome and associated proteins [BR:spil03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     134089879 (taf5l)
    STAGA complex
     134089879 (taf5l)
    TFTC complex
     134089879 (taf5l)
    SAGA complex
     134089879 (taf5l)
    SLIK complex
     134089879 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WDR55 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_SCAP ANAPC4_WD40 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_WDR19_1st WD40_like Cytochrom_D1
Other DBs
NCBI-GeneID: 134089879
NCBI-ProteinID: XP_062400198
LinkDB
Position
1:38790711..38798089
AA seq 649 aa
MKRVRTEQIQYAVTQYLKRRQYVDSEGNLKIAKLSQTAEEMAANLNVQTESSCANIVSAA
PCQADPHQYETQFSKLRTFLLEAEVSWGKEVSRVLYPLFLYLHLDMARCGLRAAADGFYG
RFHGLFLQDAEQRATVELLKGALTAQDVAAHPKLCALLEHKYVVHLSDAAYSYLLRYLQS
DDHGALCRVLSTHLQLEVTPTPRTHYQLYGNSAANNTAASNTSGSTPDAVADGLEDGTGR
PAAAPQSEAALEALQESIRRVRDGPPSLTTVCFYAFRHTERQLNAAEVSADSRLLAAAFD
SSAVKLWSLRARKLKAGPHRADVSKVRLACDLLEEEADDEDASGSEMRTLRGHCGPVYRA
AFLTDGQSGGGGGGGGPGPGQALLSCSEDATVRLWDLTSFTCAALYRGHAYPVWDVSASP
CGLYFASASADRTARLWTPSRAHPLRLYAGHLADVDCARFHPNSAYLATGSSDKTVRLWS
AQQGATVRLFTGHRGPVLALAFSPDGRYLASGGEDQRLRLWDLASGGLVKELRGHTDAVT
GLSFSPDSSLVASSSLDNSVRVWDIRNSHSAAGGGGGGGSSSAASGGTGTGGGAASGGGG
SAAAAAAADGSSSELVGLYTGDTSSILNVQFMACNLLMVTGTAQEKQEL
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgaagcgagtacggaccgaacagattcagtacgccgtgacccagtacctgaaaaggcgg
cagtatgtggattcggagggcaacctgaagattgccaagctctcacaaaccgccgaggag
atggctgccaacctcaatgtccagaccgaatccagttgtgccaacatagtctcggccgcc
ccgtgccaggccgaccctcaccagtacgagactcagttctccaagctacgcaccttcctc
ctggaggcggaggtgtcgtggggtaaggaggtgagccgcgtgctctacccgctgttcctg
tacctgcacctggacatggcgcgctgcggtctccgggcggcggccgacggcttctacggt
cgcttccacggcctcttcctgcaggacgccgagcagagggccaccgtggagctgctcaag
ggcgcgctgaccgcgcaggacgtggcggcccaccccaagctgtgcgcgctcctggagcac
aagtacgtggtgcacctgtcggacgcggcctacagctacctgctgcgctacctgcagagc
gacgaccacggcgccctgtgccgcgtgctcagcacgcacctgcagctggaggtcacgccc
acgccgcgcacacactaccagctctacggcaacagcgccgccaacaacaccgccgcatcc
aacacctcaggctccaccccggacgcggttgctgacggcctggaggacggcacgggacgt
ccggcggcggcgccccagagcgaggcggcgctcgaggcgctccaggagtccatccggcgc
gtgcgggacggcccgccctcgctgaccaccgtctgcttctacgccttccggcacacggag
cggcagctcaacgctgccgaggtgtcggccgacagccgcctgctggccgccgccttcgac
agctccgccgtcaagctgtggagcctccgcgcgcgcaagctcaaggccggcccgcaccgc
gccgacgtcagcaaggtccggctcgcctgcgacctgctcgaggaggaggcggacgacgag
gacgcgtcgggcagcgagatgcggaccctgcgcggccactgcgggccggtctaccgcgcc
gccttcctgacggacggccagtcgggcggcggcggcggcggcggtgggccgggcccgggc
caggcgctgctctcgtgctcggaggacgccacggtgcgcctgtgggacctgacgagcttc
acgtgcgcggcgctctaccgcggccacgcctacccggtgtgggacgtgtcggccagcccg
tgcggcctctacttcgccagcgcctcggccgaccgcaccgcccgcctctggacgccgtcg
cgcgcccacccgctgcgcctctacgccggccacctggccgacgtcgactgcgcccgcttc
caccccaactcggcctacctggccaccggctcgtccgacaagacggtgcgcctgtggagc
gcccagcagggggcgacggtgcgcctcttcacgggacaccgcgggcccgtgctggcgctg
gccttctcgccggacggccgctacctggcgtcgggcggcgaggaccagcggctgcggctg
tgggacctggcgtcgggcgggctggtcaaggagctgcgcgggcacacggacgccgtcacg
ggcctctcgttcagcccggactccagcctggtggcctcgtcgtcgctcgacaactcggtg
cgcgtctgggacatccggaacagccacagcgccgccggcggaggcggaggcggcggcagc
agcagcgcggcgtccggaggaacggggacgggcggaggcgcggcgtccggtggcgggggg
tcggcggcggccgcagcggcggcggacggctcgagcagcgagctggtgggcctctacacg
ggcgacaccagcagcatcctcaacgtccagttcatggcctgcaacctgctcatggtgacc
ggcacggctcaggagaagcaggagctctag

DBGET integrated database retrieval system