Sardina pilchardus (sardine): 134092727
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Entry
134092727 CDS
T10667
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spil04121
]
134092727 (pdzrn3b)
Enzymes [BR:
spil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134092727 (pdzrn3b)
Ubiquitin system [BR:
spil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
134092727 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
zf-rbx1
TRAF3_RING
RING_XB3-XBAT31
U-box
LemA
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
134092727
NCBI-ProteinID:
XP_062401751
LinkDB
All DBs
Position
9:complement(11242032..11343637)
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AA seq
1148 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKVVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRETCDYRAVGICENGCGLMLTHREQKLNNHCCLKALKAHNSALQGKVVSLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKTLAPPCKGG
ESKSVTVVLRREAGSLGFNIVGGRPCVENEAGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKVTHEQAVEAFRNAKEPIMVQVLRRAPRPKPAGPAGDMQVVDMATQTEIT
FQHIMALSKLPTAPSPPPVTVLEQYLLPEEHSPAHEYFDPADFLEGMQQEIEREELEYEE
VDLYRSNIQDKLGLTVCYRTDDEDETGIYVSDIDPNSIAAKDGRIREGDRIIQINGIEIQ
NREDAVALLTSEENKNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFT
ASMLQQKKHEEDGGTTDTATLLSQRHEKDSGVGRTDESTRNDESSEQENLGDEHAPCGPF
SSAATTLGSGHRRRPAYSQDTLGSGDLPFSSESLISESDFLGIPADECERFRELLELKCQ
VRSAAGGGGSSALYCSGMAAAAAAAAAAAGSGVGGGGEEGVDKELELLNEELRTIELECL
SIVRAHKMQQLREQYRSESWMLHNSGFRNYNTSVDAPRRHELTDITELPEKSDKDSSSAY
NTGESCRSTPLTLELSPDNSLRRASDAGPPEGGVTGSAPPGKALKPLLSPVQEACAGGGG
GGGGGGSGGRGRATSSSSSSSSKDPESAAAAQAEGQRKADAAAAAAVAANAGGKSGRGSS
SSLLQGHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPLSPTSSRAG
GPGGPGGGDGDGSELGPKMEWKVKIRSDGTRYITKRPVRDRLLKERALRIREERSGMTTD
DDAASELKMGRYWSKEERKQHAVRAREHRQRREFMKQSRMDCLRDGQGGGGGGGGGGGDG
SPGTGSGSGPDEPHKELNIIELSHKKMMKKRNKKIFDNWMTIQELLTHGTRSPDGARVYN
SLLSVTTV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgttttaaaggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaggatccgctcacaaccccgtgtggtcacgtcttttgcgctggc
tgtgtgctgccgtgggttgttcaacaaagcagctgccctgtcaaatgccaaaggatctcc
actaaagagctcaaccacgtccttcctctgaaaaacctgatcttgaagttggacataaag
tgtgacaatcatgccaggggctgtgagaaagtggtgaagctgcagcatctggcggagcac
gccgagatgtgtgactactctccggctaaatgcaggaacaagggatgcaacgaggtgctg
aacctgaaagacatggatgcccatatgcgcgaaacatgtgattacagagccgttgggata
tgtgaaaatggatgtggtttgatgctcacccacagagagcaaaaactgaacaaccattgc
tgcctgaaagccctgaaagcgcataatagcgcgttgcaagggaaagtggtcagcctcgac
aaggagtttaaaaagcagtctctgaagtcgagtaaacgggaaaagtcccttctcgctcag
ctctctgctgttcacaacgagctccaaatgacagcgctgaaataccaaaagaaattcact
gagtacagtgcaaggattgactcgctcagcaagaccttggctccaccatgcaagggtgga
gaatccaaaagtgtcacagtagtcctccgtcgggaggctggatcgttgggcttcaacatc
gtaggaggacggccatgtgtggaaaacgaggctgggacttcaaatgaaggcatctttgtg
tcgaagatcgtggagaatggaccagccgacaaagagggaggactgcagatccacgaccgc
attatggaggtgaacggtaaggacctgtccaaggtcacgcacgagcaggcggtggaggcc
ttccggaacgccaaggagcccatcatggtgcaggtgctgcggcgggcgcctcggcccaag
ccggccggccccgcgggggacatgcaggtggtggacatggccacgcagacggagatcacc
ttccagcacatcatggccctcagcaagctgcccaccgcccccagcccgccgcccgtcacc
gtgctcgagcagtacctgctgccagaggaacactctcctgcacatgagtactttgaccca
gcggacttcctggagggcatgcagcaagagatcgagcgtgaggagctggagtacgaggaa
gtggatttgtaccggtcgaacattcaggataagctgggtctcaccgtgtgctacagaacc
gacgacgaggacgagaccgggatctacgtcagtgacattgatccaaacagcatagcagca
aaagatggaagaatccgagaaggtgacaggatcatccagatcaacggcatcgagatccag
aatcgcgaggacgccgtggccctgctcaccagcgaggagaacaagaacgtctgtctgctc
gtggctcgacccgagatccagctggatgagggctggatggacgacgaccgaaacgacttc
ctggatgacctgcacatggacatgctggagcagcagcaccaccaggccatgcagttcact
gccagcatgctgcagcagaagaagcacgaggaggacggcggcaccacggacacggccacc
ctgctgtcgcagcggcacgagaaggacagcggcgtgggccgcacggacgagagcacgcgc
aacgacgagagctcggagcaggagaacctgggcgacgagcacgcgccgtgcgggcccttc
tcctcggccgccaccacgctgggcagcgggcaccgccggcggcccgcctacagccaggac
acgctgggcagcggcgacctgcccttcagcagcgagtcgctcatcagcgagtccgacttc
ctgggcatcccggcggacgagtgcgagcgcttccgcgagctgctggagctcaagtgccag
gtgcggagtgcagctggaggagggggcagcagtgccctctactgctcgggcatggcggcg
gcagcagcagcggcggcggcagcagcgggcagcggcgtcggaggaggaggcgaggagggg
gtggacaaggagctggagctgctgaacgaggagctgcgcaccatcgagctggagtgcctg
agcatcgtgcgcgcgcacaagatgcagcagctgcgcgagcagtaccgcagcgagtcctgg
atgctgcacaacagcggcttccgcaactacaacaccagcgtggacgcgccgcgccgccac
gagctcaccgacatcaccgagctgcccgagaagtcggacaaggacagctccagcgcctac
aacacgggcgagagctgccgcagcacgccgctcacgctggagctgtcgccggacaactcg
ctgcgccgcgccagcgacgcagggccgcccgaggggggggtgaccggcagcgcccccccg
gggaaggccctcaagcccctgctgtcgcccgtccaggaggcctgcgccggaggaggggga
gggggaggagggggagggtccggcgggcgcggccgagccacgtcctcgtcgtcctcgtcc
tcgtccaaggacccggagagcgccgccgccgcgcaggccgagggtcagcgcaaggcggac
gcagcagcggcagcagcggtcgccgctaacgccgggggcaagtcgggccgagggtcgtcg
tcgtcgctcctgcagggccactcgccctacaagcacgcgcacatccccgcgcacgcccag
cactaccagagctacatgcagctgatccagcagaagtcggcggtggagtacgcccagagc
cagatgagcctggtcagcatgtgccgcgacccgctgtcccccacctcgtcccgggccggc
ggaccgggcggccccggcggcggcgacggcgacggctcggagctcggccccaagatggag
tggaaggtgaagatccgcagcgacggcacgcgctacatcaccaagcggccggtgcgcgac
cggctgctgaaggagcgcgcgctgcgcatccgcgaggagcgcagcggcatgaccacggac
gacgacgccgccagcgagctcaagatgggccgctactggagcaaggaggagcgcaagcag
cacgccgtgcgcgcccgcgagcaccgccagcgccgcgagttcatgaagcagagccgcatg
gactgcctgagggacgggcagggcggcggagggggagggggaggagggggaggggacggc
agcccgggtaccgggtccggctcggggccggacgagccgcacaaggagctcaacatcatc
gaactgagccacaagaagatgatgaagaagcgcaacaagaagatcttcgacaactggatg
accatccaggagctgctgacgcacggcacgcgctcgcccgacggcgcccgcgtctacaac
tccctgctctccgtcaccaccgtctag
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