Sardina pilchardus (sardine): 134092896
Help
Entry
134092896 CDS
T10667
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a isoform X1
KO
K14966
host cell factor 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03083
Polycomb repressive complex
spil04980
Cobalamin transport and metabolism
spil05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134092896 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
134092896 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134092896 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
spil01009
]
134092896 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spil03036
]
134092896 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
spil03029
]
134092896 (hcfc1a)
Protein phosphatases and associated proteins [BR:
spil01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134092896 (hcfc1a)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
134092896 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
134092896 (hcfc1a)
MLL-HCF complex
134092896 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
134092896 (hcfc1a)
Mitochondrial biogenesis [BR:
spil03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
134092896 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
134092896
NCBI-ProteinID:
XP_062402034
LinkDB
All DBs
Position
9:complement(17021300..17039104)
Genome browser
AA seq
1804 aa
AA seq
DB search
MTSPGSALSGTSGSTLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKPKAPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
PGSSVVGWDIPITYGVLPPPRESHTAVVYTEKDTKKSRLVIYGGMSGCRLGDLWTLDIDT
LTWNKPGLSGTAPLPRSLHSATTITNKMFVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMNWENVLMDTLEDNVPRARAGHCSVSINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETEKPHSPSRVQLVRANTNSLEVSWGAVPTADTYLLQLQKYDIPSATAATSPNLNAATSL
PSNSPKSPAPASAAPAAQSLPHTGISLMAQASSPTASGLPVLPNMPGSPLGAATARGPAI
LKVAAPHGGTGTSIVTVRQANQIGKSPVTVTSLPAGVRMVIPAQTTQGTPIGNSPQMSGM
AALAAAAAATQKIPPSSTPTMLSVPAGATIVKTMAASPGSTTVKMASPIMVSNPATRMLK
TAAAQVGTATVSSPNTGTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPISMA
GGGTLFSNLGKVMSVVQTKPGQSALTGQASNNPLTQIIQTKGPLPAGTILKLVTSADGKP
TTIITTSQAGVAGSKPTILGVSSMSPTSTTKPGTTHIIKTIPMSAIGAHSGVTSSAGMKS
PITIFTTKAFTGTGTPGKIITTVPKLGGAAGQQGLTQVVLKGAPGQPGTILRTVPMSGVR
LVSPVSVSTVKPTVTTLVVKGTTGVTTLGTVTGTVSSSLAGGSVTSANASLATPITTLGS
IATLSSQVINPATITVSAAQTSLTTATALPTTSIQSGQPTQVTLITSPSSAEAQAGQDLP
VSILASPTSEQPSSSETAASDTTGTVTLVCSNPPCETHETVTTNTATTATANMGGPQRVC
SNPPCETHETGTTNTATTASSNMGGATQVCSNPPCETHETGTTNTATTASSSMGAGAQTG
TSSAPRVCSNPPCETHETGTTNTATTASSNMGAGHQMATGTAQRVCSNPPCETHETGTTN
TATTASSSMGAGAQTGTSNTAQRVCSNPPCETHETGTTNTATTASSSMAAGDQTGTGTVQ
RVCSNPPCETHETGTTNTATTATCNLETGEGAAQQSTESSEATSSTEVPSTSTTAAASSR
AVTTVTQATPAPGPSVPSISSITESTSGAVPAELTQDTAGSSEAVASEEPMQTDCPPEGA
MPMEEGDATQRYMLLAASSPQQSGMLSTPLLTPLSLHGVQMAESASQEAEALGLPPELMS
EGQTATLMVTGLTPEELAVTAAAEAAAQAAANEEAQALAASEEAQALAIQAVLQAAQQAV
MSEGNPGSEQQTHTIPIVLTPQELAALVQQQQQLQEAQAAAQLQAQEQAAPTEGLAPADS
LNDPASESNGHGDMAAAVSSAVAGLLPSTAAETLAPSNTFATVAVASPAKMQAAATLAEV
ANGIEKQSAPPAPVRVPVKKENQWYDVGIVKVTNMVVTHYYIPGGDSAYTEDDSGAMPDY
TEMKRMELQPGTAYKFRVAGINACGRGAFSEISAFKTCLPGFPGAPCAIKISKSPDGAHL
TWEPPSVTSGKIIEYSVYLAIQSSQTTEAKASAPAQLAFMRVYCGPSPSCLVQSSSLSNA
HIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESSKDAAAKPAAKRAVSSPDVKTGPKKA
RMDQ
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccctggttccgctttgtctggaaccagcggttcaacgcttcagccgcgttgg
aagcgagttcttggatggtctggtcccgtccctcggccaagacatggacacagagcagtt
gctatcaaggagcttatggtggtgttcggaggtgggaatgaaggaatcgttgatgagctc
cacgtctataacacagctaccaatcagtggtttatcccagccgtccgtggggacattcct
ccaggctgtgcagcatacggctttgtgtgcgatggtactcgactgctggtgtttggaggg
atggtggagtatgggaagtacagcaatgacctttacgaactgcaggccagtagatgggag
tggaaaaaattgaagccaaaagccccgaaaaatgggcccccaccttgcccccgcctgggc
cacagcttttctctagtgggcaataagtgctacctgtttggagggttggccaatgacagt
gaagaccctaaaaacaacattcccaggtatctaaatgacctgtacacactggagctgcgt
cccggctcctctgtggtgggctgggacatccccatcacatatggagttctgcctccccca
cgcgagagccatactgcagtagtctacacagagaaggacaccaagaagtcacggcttgtc
atctatgggggcatgagtggctgtcgcttgggagacctatggaccctcgacatagacacc
ctcacctggaacaagcccggactgagtggcacagctcccctcccacgcagccttcactca
gccaccaccatcacaaacaagatgtttgtttttggtggctgggtgcccttggtcatggat
gatgtgaaagtggccacacacgagaaggagtggaagtgtacaaatacactggcttgtcta
aatttggattcaatgaattgggagaatgttttgatggacaccctggaagataatgtaccc
agagcccgtgcaggacactgttcagtgtcaattaactctagactgtatgtgtggagtgga
cgtgatgggtaccgcaaagcctggaataaccaggtgtgctgcaaagacttgtggtatctc
gagacagagaagccacattcgccctcacgtgtgcagctggtccgtgccaacaccaactcc
ctggaggtgagctggggcgctgtgcctacggccgacacctatctgctgcagctacagaag
tacgacatcccctctgccacggcggccacttcgcccaacctcaacgccgctacctctctc
cctagcaactcccctaagagccccgcaccagcgtccgccgcgcctgcggcccagagtctg
ccgcacactggcatcagcctgatggcccaggcctcctccccgactgcatcaggcctaccc
gtcctgcccaacatgccaggcagcccactgggggccgccactgctcgtggcccagcaatc
ctgaaagtggcagctccccacggtggcactggcacatctattgtcactgtgcgtcaagcc
aaccaaattgggaagtccccagtcactgtgacatcacttcctgcaggtgttcgcatggtt
ataccagcacaaaccacacaaggaacgccaattggaaacagccctcagatgagtggcatg
gcagctctggctgctgctgcagccgcaacacagaagatcccgccctcatccacgcccaca
atgctgagtgttccagctggcgctaccattgtgaagactatggctgcttcaccaggatcc
accacagtaaaaatggcctcacccatcatggtgagcaaccctgccacccgcatgctgaag
acggccgcagctcaggttggcacggcgaccgtgtccagccccaacaccggcactcgcccc
atcatcactgtgcacaagtccggcacggttacagtggcgcagcaagcccaggtggtcacc
acagtggtgggtggggtcactaagaccatcactcttgtgaagagccctatctcaatggca
ggaggaggaacactgttctctaacctggggaaggtgatgtccgttgtacagacgaagcca
gggcagtctgccttgaccggacaggcctccaacaacccactcactcaaatcatacagaca
aaagggcccctccctgcaggcacgattctgaaactggtgacctcagcggacgggaagccc
accaccatcatcaccaccagccaggcaggggtggcgggcagcaaacccaccatcctgggc
gtcagcagcatgtcgccgacatccaccaccaaaccaggcaccacccacatcatcaaaacc
atccccatgtctgccatcggggcacacagtggtgttaccagtagtgctgggatgaagtcc
cccatcaccattttcaccaccaaggccttcactggcacgggcacccctggcaagatcatc
accactgtgccaaagctgggcggtgcagcaggccagcagggtctcactcaggtggttttg
aagggagcaccaggtcaacctggaacgatcctgcgaacggtgcccatgagcggagttaga
ctggtttcccctgtatccgtatctactgttaagccaactgtgaccaccttggttgtcaaa
ggaaccacaggtgtcactactctgggcacagtcacagggaccgtctccagcagcctggct
ggtggcagcgtcaccagtgccaacgcctccttggcgacacccatcaccacgctgggaagt
atcgccaccctgtctagtcaggtgatcaacccagcgaccatcaccgtgtctgcagcgcag
actagcctcaccacggcaacagccctccccaccacctccatacagtcagggcagcccacc
caggtgacgctaatcacgagccccagcagcgcagaggctcaggcgggtcaggacctgccc
gtgtccatcctggcgtcgccaacgtccgagcagcccagctcctccgagacagccgccagc
gacaccactggcacggtcacactggtctgctccaacccgccctgtgaaacgcacgagacg
gtcacaaccaacaccgccaccacggccaccgccaacatgggagggcctcagcgagtctgc
tccaacccgccctgcgagacccacgaaacgggcactaccaacactgccaccacggcgtcc
tcgaacatgggtggcgccactcaggtttgctccaacccgccctgcgaaacccatgagacg
ggcactaccaacacagccaccacagcgtcctcaagcatgggtgccggtgcccagactggc
accagttccgcaccgagggtttgctccaacccaccctgcgaaacccatgagacgggcact
accaacacagccaccacagcgtcctcgaacatgggtgctggtcaccagatggccactggc
accgcgcagagggtttgctccaacccaccctgcgaaacccacgagacgggcactaccaac
accgccaccacggcgtcttcaagcatgggtgccggcgcccagacgggcaccagtaacacc
gcacagagggtttgctccaacccgccttgtgaaacccatgagacgggcactaccaacacc
gccaccacagcgtcctcaagcatggcagctggcgaccagacgggcactggtaccgtgcag
agggtttgctccaacccaccctgcgaaacccacgaaacgggcaccaccaacactgcgacc
acagctacctgcaacctggagactggagaaggcgcagcccaacagagtacagagtcttcg
gaagcaaccagcagcacagaggtgccctccacatcgaccacggcagctgcatccagtcga
gcggtcaccacagttactcaggccacacccgcacctggaccctcggttccttccatctcg
tccatcactgagtcgacgtcaggtgccgtaccagcggagctcactcaggacacagcgggc
agctccgaggctgtggcgtcagaggagcccatgcagacagactgcccaccagagggcgcc
atgcccatggaagaaggagatgcaactcagcgctacatgttgctggcggcatcctctccc
cagcagtccggcatgttgagcacccctcttctcacgcctctctctcttcatggtgtccag
atggcggagtctgcatcccaggaggccgaggccctgggcctgcccccagagctcatgtcc
gagggccagaccgccacgctgatggtgaccggcctgacccccgaggagctggccgtgacc
gccgccgcagaggccgcagcgcaggctgccgctaatgaggaagcccaggctctggccgcc
tccgaggaggcccaggccctggctatccaagcagtgctgcaggccgcccagcaggccgtc
atgagcgagggcaaccccggctcggagcagcagacccacaccatccccatcgtgctcacc
ccgcaggagctggcagcactcgtgcagcagcagcagcagctccaggaggcccaggcggcc
gcccagctacaggcgcaggagcaggccgcgcccaccgagggcctggcccccgccgacagc
ctcaacgaccccgcctccgagagcaacggccacggcgacatggcggccgccgtctccagc
gctgtcgccgggctgctccccagcaccgctgccgagacattggcaccatccaacaccttc
gcaacagtagcagtagccagccctgccaagatgcaggctgcagcaacactggctgaagtg
gccaatggcatcgagaagcagagtgctcctcctgccccggtccgagtgccagtaaagaaa
gagaaccagtggtatgatgtgggaatcgtcaaggtgaccaacatggtggtgacacattat
tatatcccgggaggtgactctgcctacacggaggatgactcgggagccatgcccgactac
actgaaatgaagaggatggagttgcaaccgggcaccgcatacaagttccgagtcgcgggc
atcaatgcctgcgggcgtggcgccttctcagaaatatctgctttcaagacctgcctgcca
ggcttcccaggggcaccttgcgctatcaaaatcagcaagagcccagatggcgcccacttg
acgtgggagccgccgtcggtcacgtcgggcaagatcatcgagtactcggtgtacctggcc
atccagagctcgcaaaccaccgaggccaaggcgtcggcgccggcccagctggccttcatg
cgggtgtactgcgggcccagcccgtcctgcctggtgcagtcctccagcctgtccaacgca
cacatcgactacaccaccaagcctgccatcatcttccgtatcgccgcgcgcaatgagaag
ggctacggccctgccacgcaagtccgatggctccaggagtcaagcaaagatgctgcggcc
aagccggctgctaagagagcagtgtcctctccagacgtgaaaactggtcctaagaaggcg
cggatggatcagtga
DBGET
integrated database retrieval system
