Sardina pilchardus (sardine): 134093322
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Entry
134093322 CDS
T10667
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134093322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134093322
03009 Ribosome biogenesis [BR:
spil03009
]
134093322
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134093322
Spliceosome [BR:
spil03041
]
Complex A
U1 snRNP components
U1 related factors
134093322
Complex B
134093322
Ribosome biogenesis [BR:
spil03009
]
Eukaryotic type
Pre-60S particles
Helicases
134093322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
134093322
NCBI-ProteinID:
XP_062402435
LinkDB
All DBs
Position
1:complement(46120382..46127371)
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AA seq
616 aa
AA seq
DB search
MPGYNDRDRGRDRGYGGAPRFGGSRNGPPQGKFGNPGERLRKKHWNLDELPKFEKNFYKE
HPEVTRKSVQEVEMYRRTKEVTVKGRECPKPIMKFHEASFPNYVMDVIGKQTWTEPTPIQ
AQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQ
QVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRR
CTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQIN
VGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKRRCDELTRRM
RRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYPNS
SEDYIHRIGRTARSQKTGTAYTFFTPNNMRQANDLISVLREANQAINPKLLQMAEDRGGR
SRGGRGGYKDDRRDRYSGGRRDFGNYRDRDNDRGYGSGPKTQNGGYGGANSYDKGGSNTS
NYSNGYNNGQANSYGGAGNPVAAFQNQNFQAQPFGGNQAAGQNGMSHPPFPFTPQAPPQQ
PPQPMVPYPMPPTFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatataatgacagagaccgtggtagagataggggttatggtggcgctccccgg
ttcggtggtagtcgaaatggaccgcctcagggcaagtttggcaaccccggcgagagactg
cgtaagaagcactggaacctggacgaactcccgaagttcgagaagaacttctacaaggaa
caccctgaagtcacaaggaaatcagtgcaagaggttgagatgtacaggaggactaaagag
gtgactgttaagggcagggaatgtcccaaaccaatcatgaagttccatgaagccagtttt
cccaactatgtgatggatgtgattggcaaacaaacctggacagagccgacccccattcag
gctcagggttggcctctggccctcagtgggaaagacatggttggcatcgcccagaccggc
tccggaaagacactcgcttacctgctgccagccatcgtccacatcaatcaccagccattc
cttgaacatggcgatggcccgatctgtctggtcctggcgccgacgcgtgaactggcccag
caggtccagcaggtggctgctgagtacggccgagcctcacggctgaagaccacctgcatc
tacggcggcgctcccaagggaccacagatccgcgacctggaaagaggtgtggagatttgt
attgccactcctggacgtctcattgacttcctggaggtcggaaagaccaacctgcgtcgc
tgcacttacttggttctggacgaggctgaccgtatgctggacatgggcttcgagccccag
atccgcaagattgtggaccaaatccgacccgacagacagactctgatgtggagcgccact
tggcccaaagaggtgcgtcagctggcagaggacttcctgaaggagtacgtacagatcaac
gtgggcgccctgcagctgagcgccaaccacaacatcctgcagatagtggatgtgtgcaac
gacggcgagaaggatgacaaactcctgaggcttctggaggagattatgagcgagaaggag
aacaagaccatcatctttgtcgagaccaagaggcgttgtgacgagctgaccaggagaatg
aggcgagatggctggccagcaatgggcattcatggagacaagagtcagcaggagcgagac
tgggtgcttaacgagttcaaatatggcaaggcatgcatcctcatcgccacagacgtcgcc
tcccgcggtctagatgtggaggatgtgaaatttgtcatcaattatgactaccctaactca
tccgaggactacatccatcgcatcggcagaacggcccgtagtcaaaagacgggcacggcc
tacacgttctttacgcccaacaatatgaggcaggccaacgacctgatctctgtcctccgc
gaggccaaccaggccatcaaccccaagctgctccagatggcggaagacagaggaggtcgc
tctcgagggggccgaggtggctataaggacgaccgccgtgataggtattctggggggaga
agggattttggtaactatagggatagggataacgataggggctacggtagcggaccaaag
acacagaacggtggctatggcggggccaacagctatgacaagggcggcagcaacaccagt
aactacagcaacggttacaacaacggacaggccaacagttacggtggcgccggcaacccg
gtcgccgcctttcagaaccagaacttccaggcccagccgtttggcgggaaccaggcggca
ggccagaacggcatgagccacccgccgttccccttcaccccacaggcgccccctcaacag
cccccacagcccatggtgccctaccccatgccccccacgttccctcagtaa
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