Sardina pilchardus (sardine): 134093506
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Entry
134093506 CDS
T10667
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spil03000
]
134093506 (ctcf)
03036 Chromosome and associated proteins [BR:
spil03036
]
134093506 (ctcf)
Transcription factors [BR:
spil03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
134093506 (ctcf)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134093506 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
zf-C2H2_15
DUF7128
Motif
Other DBs
NCBI-GeneID:
134093506
NCBI-ProteinID:
XP_062402547
LinkDB
All DBs
Position
10:complement(10554370..10563548)
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AA seq
811 aa
AA seq
DB search
MKYTFLVQVLPMEGGPTDAVVEEAGDAFKAKECKTYVRRREDEDVGADLLHAAGLEAVDQ
SHVEAHEHVGAEAQLVEGVVNVNSSVEMMVMDGLDPALLQMKTEVMDPGAVGVAPHEATV
TTVDDTQIITLQVVNMEEQQLGLGELQLVQVPVSAVPVTTATVEELQGTLVDATAMPKDG
EPVICHTLPLPEGFQVVKVGANGEVETVEQDELQPQEEPQAQEEGEEMITEPQNEDPAWA
KDPDYQPPAKKTKKTKKSKLRYNTEGEKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKP
PKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRN
HLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIR
SHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHT
ENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGRKCRYCEAVFHERYALIQHQKSHKN
EKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSHCEKTFRQKQLLDMHFRRYHDPNFV
PTSFVCTKCGKTFTRRNTMARHAENCNGQDTTDGENGAPPKKGRGRKRKMRSRKDDDDDS
DEHGEPDLDEDDDEELEEEALDEVEMEVEQAPPSVPIPAPASPPVKRKRGRPPKNAPKPA
PTPTKAPAAAAAIIQVEDESTGAIENIIVKKEPEGGEAAAVAAAAAAAAADAPTVEVQAE
EGTVETVQLAVSEGAPNGDLTPEMILSMMDR
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacacatttttggtgcaggtattacccatggaagggggaccgaccgatgcggta
gtggaggaggccggtgacgcctttaaggccaaagagtgcaaaacctacgtgcggcggcgc
gaggatgaagatgtgggcgcggatctgctgcacgcggctggcctggaggccgtggaccag
tcccatgtggaggcccacgagcacgtgggcgcagaggcccagctggtggagggggtagtg
aacgtcaacagtagcgtggagatgatggtcatggacggcctggaccctgcgctgctccag
atgaagaccgaggtgatggacccgggagcagtcggggtggcaccccacgaggccacagtg
accacggtggacgacacacagatcatcacgctgcaggtggtcaacatggaggagcagcag
ctaggcctcggggagctgcagctggtgcaggtgcccgtctctgccgtgcccgtcaccacg
gccactgtggaggagctgcagggcaccctggtggatgccaccgccatgcccaaagatgga
gagcctgtcatctgccacaccttaccactgcccgagggattccaggtggtgaaagttggc
gctaacggagaggtggagactgtggagcaggatgagctccaaccacaggaggaaccccaa
gctcaggaggagggcgaggagatgatcactgaaccacaaaacgaggaccccgcctgggcc
aaagaccctgactaccagccccctgccaagaagaccaagaagacaaaaaagagcaagctg
cgctacaacaccgagggcgagaaggacatggacgtgtctgtgtacgactttgaggaggag
cagcaggagggtctgctctcggaggtcaacgctgagaaagtggtgggcaacatgaagcca
cccaaacccaccaaaatcaagaagaagggtgtgaagaaaacattccagtgcgagctgtgc
agctacacctgcccccgccgctccaacctggaccgccacatgaagagccacacggacgag
aggccacacaaatgtcatctgtgcggccgcgccttcaggaccgtcactctgttgagaaac
cacctgaacacccacacaggcaccagaccacacaagtgcactgactgtgacatggcgttt
gtaaccagtggagagctggttaggcacagacgttacaagcacacccacgagaagcccttc
aagtgctctatgtgcgattacgccagtgtggaggtaagtaagctgaagcgccacatccgc
tcccacactggagagcgccccttccagtgcagcttgtgcagctacgccagcagagacacg
tacaagctgaagagacacatgaggacgcactcaggagagaagccctatgagtgttacatc
tgccacgctcgcttcacccagagtggcactatgaagatgcacatcctgcagaaacacact
gagaacgtggccaagttccattgcccacactgcgacacagtcattgcccgcaagagcgat
ttaggtgtacatctgcgcaagcagcactcgtacattgagcagggccggaaatgtcgctac
tgcgaggcagtcttccacgagcgctacgccctcatccagcaccagaagtcccacaagaac
gagaagcgcttcaagtgcgaccagtgcgattacgcatgccgacaggagcgtcacatggtg
atgcataagcgcacccacaccggtgagaagccgtacgcctgcagccactgtgagaagacc
ttcaggcagaaacagctgctggacatgcacttccgccgctaccacgaccccaactttgtg
cccacctcctttgtgtgcaccaagtgtggcaagacattcacccgcaggaacaccatggcc
cggcatgcagagaactgcaatggccaggacaccaccgatggcgaaaacggagctcctccc
aagaaaggccgcggcaggaagaggaagatgcgcagcaggaaggatgacgacgatgacagt
gacgagcacggtgagcccgatctggacgaagacgatgacgaggagttggaagaggaggct
ctggatgaggtggagatggaggtggagcaggcaccacccagtgtgcccatcccagcgccc
gcttccccgccagtcaagaggaaacgtggcaggcctcccaagaacgcccccaagcccgcc
cccacccccaccaaagcacccgcagcagcagcagccatcatccaggtggaggacgagagc
acgggggccatcgagaacatcatcgtgaagaaggagcccgagggaggagaggcggcggca
gtggcagcagcggcggcggcggcggcggcagacgcccccacagtggaggtgcaggccgag
gagggcaccgtggaaacggtgcagctggcggtttcggagggagcgcccaacggggacctg
accccggagatgattctgagcatgatggaccggtga
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