Sardina pilchardus (sardine): 134094554
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Entry
134094554 CDS
T10667
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spil03000
]
134094554 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
spil03310
]
134094554 (roraa)
Transcription factors [BR:
spil03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
134094554 (roraa)
Nuclear receptors [BR:
spil03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
134094554 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
AAA_17
Motif
Other DBs
NCBI-GeneID:
134094554
NCBI-ProteinID:
XP_062404122
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Position
10:13795146..13866093
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AA seq
469 aa
AA seq
DB search
MMYFVISAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREHQQQ
PGEAEPLTPTYGGLAANGLTELHDDLGGYMDGHTPEGAKPDSAVSSFYLDIQPSPDQSGL
DINGIKPEPICDFTPGSGFFPYCSFTNGESSPTVSMAELEHLAQNISKSHMETCQYLREE
LQQMTWQSFLQEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIV
LLKAGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMH
LSEDEIALFSAFVLMSADRSWLQEKMKVEKLQQKIQLALQHVLQKNHREDGILTKLICKV
STLRALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQAMPVDG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtcatttcagctatgaaagctcaaattgaaattattccttgcaagatc
tgtggagacaaatcatcaggcatccattatggggtgataacatgtgagggctgcaagggt
ttcttcaggaggagtcagcagagcaacgcggcgtactcgtgtccccgtcagaagaactgc
ctgattgaccgcaccagccgtaaccgctgccagcactgcaggctacagaagtgcctggca
gtgggcatgtcacgggacgcggtgaagttcggccgcatgtccaagaagcagcgggacagc
ctgtacgcggaggtgcagaagcaccggctgcagcagcagcagcgtgagcaccagcagcag
cccggcgaggccgagcccctcacgcccacctacggcggcctggccgccaacggcctcacc
gagctccacgatgacctgggcggctacatggacggacacaccccggagggcgccaagccc
gactcggccgtcagcagcttctacctggacatccagccctcgcctgaccagtccggcctg
gacatcaacggcatcaagcccgagcccatctgcgacttcacgcccggctccggcttcttc
ccctactgctccttcaccaacggcgagagctcgcccaccgtctctatggcagagctagaa
cacctggcccagaacatctccaagtcccacatggagacatgtcagtacctgagggaggag
ctccagcagatgacctggcagagcttccttcaggaggagatggagagctaccagaacaag
cctcgagaagtcatgtggcagctgtgcgccatcaagatcacagaggccatccagtatgtg
gtggagttcgccaagcgcatcgacggcttcatggagctgtgtcagaacgaccagatcgtg
ctgctcaaagcaggctctctggaggtagtgtttgtccgaatgtgccgtgcctttgactct
cagaacaacacagtctatttcgatggaaagtacgctggtcctgacgtgttcaagtcatta
ggctgtgacgatttgatcagctctgtctttgagtttgggaaaaacttgtgttctatgcac
ctgtctgaggacgagatcgccctgttctccgcgtttgtgttgatgtcagcagaccggtcc
tggcttcaggagaagatgaaggtggagaaactacaacaaaagatccagttggccctgcaa
catgtcctgcagaagaaccacagagaggatggcatcctgactaagttgatatgcaaagtg
tcgacgctgcgagcgctgtgcagcaggcatacagagaagctgacggctttcaaagcaata
tacccagacattgtgcgtgcccacttcccccccttatacaaggagctgtttgggtcggac
tttgagcaggccatgcccgtggacgggtag
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