KEGG   Sardina pilchardus (sardine): 134095247
Entry
134095247         CDS       T10667                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
  KO
K07573  exosome complex component CSL4
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134095247 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spil03019]
    134095247 (exosc1)
Messenger RNA biogenesis [BR:spil03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     134095247 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     134095247 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 134095247
NCBI-ProteinID: XP_062404679
LinkDB
Position
1:50475764..50478631
AA seq 199 aa
MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLAGYVLRKNEGEELPVISVVKETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKC
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAALILSGAQMVPVSWCEMQCPR
THAKEFRKVARVQPEYLQA
NT seq 600 nt   +upstreamnt  +downstreamnt
atgtcgccgatgaagctgtgtgttccaggtgagaggctttgcagcacggaagattgcata
cccgggacgggcacgtacttgagacatggatatatcttcgcctctcttgcgggctacgtg
ctgagaaaaaacgaaggagaggagctacccgtaatctctgttgtaaaggagacagagact
cagttattgcctgacgttggcgctatagtaacttgcaaggtgaccagtatcaaccccagg
tttgctaaggttcacatcctctacgttggttccaccccactgaaggacaggttcagaggg
accataaggaaagaagatgtaagagcaacagaaaaagacaaggttgaaacctataaatgc
tttcgacctggtgatatcgtccttgcaaaagtgatctcccttggtgatgtgcagtccaat
tatctcttgacaacagcagaaaatgagctcggtgttgtggtggcccacagtgaagcagct
ctcatcctctcaggtgctcagatggtgcccgtcagctggtgcgagatgcagtgtccgcgc
acccacgccaaggagttccgcaaggtggcgcgggtacagcctgagtacctgcaggcgtga

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