Sardina pilchardus (sardine): 134095247
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Entry
134095247 CDS
T10667
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134095247 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134095247 (exosc1)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
134095247 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
134095247 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
134095247
NCBI-ProteinID:
XP_062404679
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Position
1:50475764..50478631
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AA seq
199 aa
AA seq
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MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLAGYVLRKNEGEELPVISVVKETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKC
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAALILSGAQMVPVSWCEMQCPR
THAKEFRKVARVQPEYLQA
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatgaagctgtgtgttccaggtgagaggctttgcagcacggaagattgcata
cccgggacgggcacgtacttgagacatggatatatcttcgcctctcttgcgggctacgtg
ctgagaaaaaacgaaggagaggagctacccgtaatctctgttgtaaaggagacagagact
cagttattgcctgacgttggcgctatagtaacttgcaaggtgaccagtatcaaccccagg
tttgctaaggttcacatcctctacgttggttccaccccactgaaggacaggttcagaggg
accataaggaaagaagatgtaagagcaacagaaaaagacaaggttgaaacctataaatgc
tttcgacctggtgatatcgtccttgcaaaagtgatctcccttggtgatgtgcagtccaat
tatctcttgacaacagcagaaaatgagctcggtgttgtggtggcccacagtgaagcagct
ctcatcctctcaggtgctcagatggtgcccgtcagctggtgcgagatgcagtgtccgcgc
acccacgccaaggagttccgcaaggtggcgcgggtacagcctgagtacctgcaggcgtga
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integrated database retrieval system