Sardina pilchardus (sardine): 134095319
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Entry
134095319 CDS
T10667
Symbol
tnpo2b
Name
(RefSeq) transportin-2 isoform X1
KO
K18727
transportin-2
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134095319 (tnpo2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134095319 (tnpo2b)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
134095319 (tnpo2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
TOR1L1_N
IBN_N
TPR_IPO5
HEAT_EF3_N
Vac14_Fab1_bd
Cnd1
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
MMS19_C
Ltn1_1st
UNC45-central
INTS7_N
HEAT_MROH2B_1st
Dopey_N
TPR_TTI1_C
RTP1_C1
TPR_IPO11
DUF2573
Caerin_1
Motif
Other DBs
NCBI-GeneID:
134095319
NCBI-ProteinID:
XP_062404756
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Position
1:complement(50839947..50849446)
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AA seq
897 aa
AA seq
DB search
MCMLPHSRMEWQPDEQGLQQVLQLLKDSQSPDTATQRAVQEKLEQLNQYPDFNNYLIFVL
TSLKSEDEPTRSLSGLILKNNVKAHYQNFPPAVADFIKRECLNNIGDPSPLIRATIGILI
TTIASKGELQTWPELLPQLCNLLNSEDYNTCEGSFGALQKICEDSSELLDSDALNRPLNI
MIPKFLQFFKHYSPKIRSHAVACVNQFIISRAQALMDNIDTFIESLFALAGDEDSEVRKN
VCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDPDENVALEACEFWLTLAEQPICKEALS
GHLVQLIPILVNGMKYSEIDIILLKGDVEEDETVPDSEQDIKPRFHKSRTITLQHEGGEG
EEGEDIDEDEDDDDDTLSDWNLRKCSAAALDVLANVFRDDLLPHLLPLLKGLLFHPDWVV
KESGILVLGAIAEGCMQGMVPYLPELIPHLIICLCDKKALVRSIACWTLSRYAHWVVSQP
PDAHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSFILDTLVFAFGKY
QHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSV
ATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYSQQPDQYEAPDKDFMIVALDLLSGLAE
GLGGHVDQLVARSNIMTLLFQCMQDTMPEVRQSSFALLGDLTKACFPHVKPCIAEFMPIL
GTNLNPEFISVCNNATWAIGEICMQMGVEMQPYVALVLNPLVEIINRPNTPKTLLENTAI
TIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICVMIGVNPGGVVQDFI
FFCDAVASWVNPKEDLRDMFYKILHSFKEQVGEENWQQFSEQFPPILKERLAACYGV
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgtgcatgctgccgcacagcaggatggagtggcagccagacgagcagggattgcagcag
gtgctgcagctcctgaaggactctcagtctccggacacggccacacagagggctgtgcaa
gagaaactcgagcagctgaaccagtatcctgacttcaacaattacctgatctttgtcctc
accagtctgaagtctgaagatgagcccactcggtccctcagcggcctcatcctgaagaac
aatgtgaaggctcactaccagaactttccacctgccgtggcagatttcatcaagcgggag
tgtctgaacaacattggtgatccgtcccctctcatccgagccactattggtatcctgatc
accaccatcgcctctaagggggagctgcagacatggccagagctgctgcctcagctgtgc
aacctgctcaactccgaggactacaacacctgtgagggctcttttggtgcactgcagaag
atctgtgaggactcctctgagctgctggacagtgatgcactcaaccgccccctcaacatc
atgatccccaagttcctccagttctttaaacactacagccccaagatcagatctcatgct
gtggcatgtgttaatcagttcattatcagccgagcccaggcgctcatggacaacatcgac
accttcatcgagagtctcttcgcgctggctggtgatgaagactccgaggtgaggaagaac
gtgtgccgggcgctggtgatgctgctggaggtccgcatcgacaggctcatcccccacatg
cacagcatcatccagtacatgctccagcgcacgcaggaccctgatgagaacgtggcgctg
gaggcctgtgagttctggctcactctggcggagcagcccatctgtaaggaggcgctgtct
ggccatcttgtccaactcattccaatcctggtgaatggaatgaagtattctgagatcgac
atcatccttctgaagggcgatgtggaggaggacgagacggtgccggacagcgagcaggac
atcaagccgcgcttccacaagtcgcgcaccatcaccctgcagcacgagggaggggagggc
gaggagggcgaggacatcgacgaagacgaggatgacgacgacgacacgctgtctgactgg
aacctgcggaagtgctcggcggcggcccttgatgtgttggctaacgtgttccgtgacgat
ctactgccccacctgctgcccctgctgaagggcctgctgttccaccccgactgggtggtc
aaggagtcgggcatcctggtgctgggggccatcgctgagggttgcatgcagggcatggtg
ccgtacctgccggagctgatcccccacctcatcatctgcctgtgcgataagaaggccctg
gtgcgctccatcgcctgctggacgctcagccgctacgcccactgggtggtcagccagccg
ccggacgcccacctcaagcccctgatgaccgagctgctcaaacgcatcctggacgggaac
aagagggtgcaagaggctgcttgcagtgcgtttgccaccctggaggaggaggcgtgcacg
gagctggtgccctacctcagcttcatcctggacacgctggtgttcgccttcgggaagtac
cagcacaagaacctgctcatcctctacgatgccatcgggacgctggccgactctgtgggc
caccacctcaaccagccggagtacatccagaagctgatgccacccctcattcagaagtgg
aacgagctgaaggatgaggataaggatctcttccctctgctcgagtgtttgtcgtcggtg
gcgacggcgctgcagagcggcttcctgccctactgtgagcccgtgtaccagcgctgcgtc
accctggtgcagaagactctggcccaggccatgatgtacagccagcagcctgaccagtac
gaggcccccgataaggacttcatgatcgtggctctggacctgctcagcggcctggccgag
ggcctgggtggacacgtggaccagctggttgcccgcagcaacatcatgaccctgctcttc
cagtgcatgcaggataccatgccggaggtgaggcagagctcctttgctttgctgggtgac
ctgaccaaggcctgcttcccccacgtcaagccctgcatcgctgagtttatgcccatactt
gggactaatctgaatcctgagttcatctcggtgtgcaacaacgccacctgggccatcggc
gagatctgcatgcagatgggtgtggagatgcaaccgtatgtggctctggttctcaaccct
cttgtggagatcatcaatagacccaacactcccaagaccctcctggagaacacggccatc
accatcggtcgcctgggatacgtgtgtccacaggaagtggctcccatgctgcagcagttc
atccggccctggtgcacatctttgcgcaacatccgtgacaacgaggagaaggactccgcc
ttccgggggatctgcgtcatgattggtgtgaaccctggaggggtggtgcaggatttcatt
ttcttctgtgatgctgtggcctcctgggtgaaccctaaagaagacctacgggacatgttc
tataagatcctgcacagctttaaggaacaggtgggagaggagaactggcagcagttctct
gagcagttcccccccatcctgaaggagaggctggctgcctgctacggcgtctag
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