KEGG   Sardina pilchardus (sardine): 134095385
Entry
134095385         CDS       T10667                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03420  Nucleotide excision repair
spil04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    134095385 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    134095385 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:spil04121]
    134095385 (ddb1)
   03400 DNA repair and recombination proteins [BR:spil03400]
    134095385 (ddb1)
Ubiquitin system [BR:spil04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     134095385 (ddb1)
DNA repair and recombination proteins [BR:spil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      134095385 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      134095385 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 134095385
NCBI-ProteinID: XP_062404864
LinkDB
Position
11:complement(13548093..13570421)
AA seq 1140 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGGVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVT
QDSKSLVSEWKEPQGRNISVAACNSTQVVLAVGRVLYYLQILTGELKQISTTEMEHEVAC
LDITPLGESGGESSLCAVGLWTDISARVLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDLQSGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEMQDASGATNPVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGDEVEVHSLLVVDQHTFEVLHAHQLLQNEYALSMVSCKLGRDPAVYFVVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSGLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgttgtcacagcgcagaaaccaacggcagtaaatgcttgcattact
ggccacttcacctctgcggaggacctgaacttgctgatcgctaagaacacacgattggag
atctatgtcgtcactgcagaggggcttcggcccgtcaaggaagtgggcatgtatggcaag
attgccgttatggagctcttcaggccaaagggtgagagcaaggatctcctcttcattctc
acggccaaatacaacgcatgcattctggagtacaaacagaatggggagagcattgacatt
atcacacgtgctcatgggaatgttcaggaccgcattggtcgcccctctgagacgggcatc
attggcatagtggacccggagtgcaggatgatcgggctgcggctgtacgatggcctgttc
aaggtcatccccctggaccgcgagaaccgcgagctcaaagccttcaacatccgcctggag
gagctgcaggtcatcgacgtgcacttcctgtacggttgccaggcaccaaccgtctgcttc
atctaccaggacccacagggccgacatgtgaagacctatgaagtgtctctgagggagaag
gagttcaacaaggggccctggaagcaagagaatgtggaggcagaggcctcgatggttata
ccagtacctgagccatttggtggtgctataatcattggtcaggagtctattacataccac
aatggagataaatatttggccattgctccccccatcatcaagcaaagcaccatcgtgtgt
cacaaccgcgtggaccccaacggctcgcgctacctgctgggggacatggagggccgcctc
ttcatgctgctcctggagaaggaggagctgatggacggaggcgtggtgctcaaggacctg
cgcgtggaactacttggagagacctccattgctgagtgtctcacctaccttgacaatgga
gtcgtgttcgtgggctccagacttggcgactcccagttggttaagctaaatgtggacagt
aatgaccagggctcctatgtggcggtgatggagaccttcactaatctgggtcctattgtg
gacatgtgtgtggtggaccttgagcgacagggacaaggccagcttgtcacctgctctggc
gccttcaaagagggctctctgaggatcatccgcaatggcattggcatccacgagcacgcc
agcatcgacctgccaggaatcaaaggactgtggcccctgcgctccgaggctggcagagag
accgatgacatgctggtgctctccttcgtgggtcagaccagagtgctgatgctgagtgga
gaggaagtagaggagacggagctgccaggattcgtggacaaccagcagaccttcttctgt
gggaatgtggcccaccagcagctcatacagattacgtctggctctgtgcggctggtgacc
caggacagcaagtctctggtgagcgagtggaaggagccgcaggggcgcaacatcagcgtg
gccgcctgcaactccacacaggtggtgctggccgtgggccgagtgctctactacctgcag
atcctcaccggagagctcaagcagatcagcaccacggagatggagcacgaggtggcctgc
ctggacatcacccctctgggggagagcggcggcgagtcgtccctgtgcgccgtggggctc
tggacggacatctcggcccgcgtgctcaagctgccctgcttcagcccgctgcacaaggag
atgctgggaggagagatcatccctcgctccatcctgatgacgacgtttgaggggagtcac
tatcttctgtgtgcccttggagacggagccctcttttactttggcctggatctacaatcc
ggcgctctgagcgagcgcaagaaggtgaccttgggcacgcagcccacggtgctgcgcacg
ttccgctcgctctccacctccaacgtgttcgcctgctccgaccggcccaccgtcatctac
tccagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaactccgaaggctaccccgacagcctggcgctggccaacaacagcactctcacc
atcggcaccatcgacgagatccagaagttgcacatccgcaccgtgcccctctatgagtca
ccaaggaggatctgctaccaggaggtgtcccagtgcttcggggttctgtccagcagggtg
gagatgcaggatgccagcggcgccaccaacccagtccgccccagcgccagcactcaggct
ctttccagcagtgtaagctccagtaagctctttccaagcagcacttcaccacatgagacc
tcctttggggacgaggtggaagtccacagtctgcttgtagtggaccagcacacctttgaa
gtgctgcatgcccaccagctgctgcagaacgagtacgccctcagcatggtgtcgtgcaag
ctgggccgcgacccggccgtctacttcgtggtgggcaccgccatggtctaccccgaggag
gccgagcccaagcaggggcgcatcatcgtcttccactacaccgacggcaaactccagacg
gtggctgagaaggaggtgaagggagcggtgtactccatggtggaattcaacggcaaactg
ctcgccagcatcaacagcaccgtccgtctgtacgagtggaccgctgagaaagagttgagg
acggagtgcaaccattacaacaacatcatggctctgtacctgaagaccaaaggagacttc
atcctggtgggagatctcatgagatcagtgctgctgctggcctacaagcccatggagggc
aactttgaggagattgcacgggatttcaaccccaactggatgagtgccgttgagatcctc
gacgatgacaacttcttgggggcagagaacgcctttaacctctttgtttgccagaaagac
agtgctgccaccacagacgaggagcggcagcacctccaggaggtgggcgtgttccacctc
ggcgagttcgtcaacgtcttctcccacggctccctggtgctgcagaacctgggcgagagc
tccacgcccacgcaaggctccgtgctctttggcaccgtcaacggcatgatcgggctggtg
acatctctgtctgagggctggtacagcctgctgttagatctgcagaacagactcaacaag
gtcatcaagagcgtgggcaagattgagcacagcttttggaggtctttccacacggagcgc
aagacagagcaggccacaggcttcatcgacggcgacctgatcgagagcttcctggacctg
ggccgagccaagatgcaggaggtggtcagcggattacagattgacgacgggagtgggatg
aaacgcgaggccacagtggatgaggtcattaagattgtggaagagctcactcgcatccat
tag

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