Sardina pilchardus (sardine): 134096085
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Entry
134096085 CDS
T10667
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04350
TGF-beta signaling pathway
spil04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
134096085 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
134096085 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
spil04515
]
134096085 (neo1a)
Cell adhesion molecules [BR:
spil04515
]
Immunoglobulin superfamily
DCC/UNC5 family
134096085 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
ig
Pur_ac_phosph_N
Ig_2
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
fn3_SORL1
C2-set_2
Tissue_fac
fn3_2
V-set_CD47
Unc5_NetrinR_N
C2-set
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
134096085
NCBI-ProteinID:
XP_062405822
LinkDB
All DBs
Position
11:33790761..33866418
Genome browser
AA seq
1435 aa
AA seq
DB search
MAERGADFLLSLICLTFLHPLSMAVHVDKESTVPQFIPFGFSVEPVDILVVRGGPAILNC
SVDSPVAARVEWKKDGSFLSLQADERRQLLDDGSLFISSVVHSKHNKPDEGVYQCVASIQ
NMGTISSKTARLSVAGIPRFSSQPEAGLVKHGDNHVFLCDINQDLVAFSRWELNRQPLLL
DQRVFQLPSGALVVSNASDADAGLYRCVVDTVGAMKNSEEAELKVISETADRRKLEFLKT
PSAMSRVLGDSVLMPCVVTGYPAPYVRWMFNGQLIEESEERFEIVGGGSLRVLNLTEEDA
GTFSCLADNLNDSIEAQVELKIQVPPQFLKKPANTYAHESMDIIFECEVTGSPAPTVKWV
KNGDTVIPSDYFKVIKEHNLQVLGLVKSDEGFYQCMAENDAGNVQASAQLIILEHDVSLP
SPSSPSLISATTEHVTPGSGGSDGPTPSAPRDLVASLVSTRFIKLTWRQPAETHGEEVAY
SVYYSQEGMNRERIVNTSQPGEMQVTIQNLMPDCKYTFRVVARNNNGVGESSTALTVATQ
PEVQVPGPAPNLQAVATSPTSITVSWDIPLTGNGEIQTYKLYHTAKGQDTEQEMDVKGLS
YTFSGLKKFTEYSFRVVAYNKHGPGVSTDDVMAQTFSAVPSAPPQNVTVEILNSKSIMVR
WQPPPADDQNGEITAYKIRYRKGARKSEASEIVAGTQLHKLLDNLQRGTEYSVRVTAMTL
NGSGPASDWVTSETFESDLDESRVPDIPSSLHVRPLVNSIVVSWTPPENQDIVVRGYTIG
YGIGSPHAQTIKVDYKQRYYSIENLDPSSHYVITLKAFNNVGEGIPVYESAITRTQAVVD
PTPMLPPVGVQASVLSHDTVKVTWADNSLPKNQKITDARYYTVRWKTNIPANTKFKMANT
TTLNHMVTGLKPNTLYEFSVMVTKGRRCSTWSMTAHGTTFESIPSSSPKDVTVVSKEGRP
RTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHNWVIDPIVGNRLTHQIQDLTLDTTYFF
KIQARNSKGMGPMSEAVQFRTPKAESSDKMANDQASGLPKTGSRLPVPERDGVVGKTTSE
NHILVIVIIISVGAFTIIVVVVGAFLCTRRTTSQQKKKRAACKSTNGSHKYKGNTKDLKP
PDLWIHHERLELKPMDKSPDPNPVMTDTPIPRTSQDITPVDSTLDNPVLQRRNSYRGHES
EDNMSTLAGRRGMRPKMMMPFDTQPPQPVISAHPIHSLDNHYHHYHLDTLTSPTHGHLHH
QHSPRSISTPISHLDGSNSTESVSRTIASTELLPAASAQPVYSVEPSETEVSYHSSATEE
EPNTYPPTAHVRPTHPLKSFAVPAITPHNPTFESPALPSTPLLAQTGPHSVKTASIGTLG
RTRTPMVVTVPSAPDAPESSKMLEDPENSYKTDVLTEEMAHLEGLMKDLNAITTT
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagcagattttctgctctctctcatctgtctcacctttctacacccg
ctttccatggccgttcatgtcgacaaagagtcaacagtgcctcaattcattccatttggc
ttctctgtggaaccagtggacatacttgtggtacgaggtggaccggccatactaaactgc
tcagtggacagcccagtagctgctcgagtagagtggaagaaagatggtagcttcttgagt
ctgcaggcagatgagcgacggcaactcctggatgatggctcactgttcatctcgtcagtg
gtgcattcaaaacacaataaacctgatgagggtgtttaccaatgtgtggcatccatccag
aacatgggcactataagtagcaagacagcacggctcagcgtggcaggtatacctaggttc
tccagtcagcctgaagcaggccttgtgaaacatggtgataaccatgtattcttatgcgac
attaatcaggaccttgtggctttttcccgctgggagctcaaccggcagcccttattgcta
gatcagagggtctttcaactgcccagtggggcactggttgtcagcaatgcctctgatgct
gatgcaggactttatcgctgtgtggttgatacagtgggtgcaatgaaaaacagtgaagaa
gcggagcttaaagtcatatctgaaaccgcagatcggagaaagcttgaatttttgaagacg
ccctcagccatgtccagagtgctaggggacagtgtacttatgccctgtgtggtgacaggc
tatcctgctccctatgttagatggatgtttaatggccagctcattgaggagagtgaggaa
cgttttgaaattgttggtgggggaagtctgcgtgttctcaacctaactgaagaggatgct
gggacattcagctgccttgcagacaatttgaatgactccatagaggctcaggttgagctg
aaaattcaagttcctccccagttcctgaaaaagccagcgaacacctatgcccatgaatca
atggatatcatctttgagtgtgaagtaacaggctcacctgcaccaactgtcaaatgggtc
aagaatggagatacggtcatccccagtgattacttcaaagtaattaaggagcacaatctc
caggtgcttggactggtgaaatccgatgaaggcttctaccagtgtatggctgagaatgat
gctggcaatgtacaagccagtgcccaactcattattctggaacatgatgtgtccctgccc
tccccctcatccccctcactgatcagtgccactactgaacatgtaacaccaggctctggt
ggcagcgacggacctacaccctcagccccacgtgatcttgtggcttcgctcgtgtccacc
cgcttcattaagctgacctggaggcagccagctgagacccatggggaagaagttgcctac
tctgtctactacagccaggagggtatgaacagggaacgcatagtgaacaccagtcagcct
ggagagatgcaggtcaccattcagaacctcatgcccgattgcaagtacaccttccgggtg
gttgcacgcaataataatggtgtgggagagagctccactgccctgactgtcgccacacag
cctgaagttcaggtaccaggaccagctcccaatcttcaagccgtggccacctcccctacc
tcaattactgtaagctgggacatccctctcacaggcaatggagagattcagacttacaag
ctttaccacactgcaaaaggccaagacacagagcaggaaatggatgtaaaaggtctgtca
tacaccttcagtgggcttaaaaaatttacagagtacagcttccgagtggtggcttataac
aaacatggaccaggggtatcaacagatgatgtgatggcccagacattttcagctgtacca
agtgccccaccacagaatgtgactgtagagattctgaactcaaagagtattatggtgcga
tggcaaccgccgcctgcagatgatcagaatggggagattactgcatataaaatccgttac
cgaaagggggcccgaaaaagtgaggcgtcagaaattgttgcagggacacagctccacaaa
ctccttgacaatttgcagcgtggaactgaatattcagtacgagtcactgctatgacgtta
aatgggtcaggtccagcctcagactgggttacctctgagacctttgagagtgatcttgat
gagtccagagttccagacatcccaagttccttgcatgtgcgacccttggtcaacagcata
gtagtgagttggactcctccagagaaccaagatatcgtggtcagaggttacactattggc
tatggtatcggcagcccacatgctcagactataaaagtggactacaaacagcggtactac
agcattgagaacctagatccaagttcccactatgtgataactttgaaggctttcaataat
gttggagaaggcatacctgtctatgagagtgccatcacccggacccaagcagtcgtagat
cctacccccatgctgcccccagtgggagtgcaggcctccgtgctcagccatgacacagtc
aaggtcacctgggctgacaactcgctgcccaagaaccagaagatcacagatgcccgttat
tatacagtgcgctggaaaactaacataccagccaacaccaagtttaagatggccaacact
actaccttgaatcatatggttactgggctgaagcccaacacactatatgagttttcggtc
atggtaactaaaggacgaagatgcagtacttggagcatgactgcccatggcacaacattt
gagagcattcccagctcttccccaaaagatgtgactgttgttagcaaggagggccggcca
aggaccatcatagtgaactggcagcctccttcggaagccaatggaaaaattacagggtac
ataatctactacagcacagatgtcaatgcagaggtgcacaactgggtaattgaccctata
gtgggcaacagacttactcatcagatccaagacctcacgctggacaccacatacttcttc
aagattcaggctcgcaactccaagggcatgggccccatgtcagaggctgtacaattccgt
acacctaaagctgaatcctcagacaaaatggctaatgaccaagcctctggcctcccaaag
accggtagccgactcccagtcccagaaagagatggagttgttggaaagaccaccagtgag
aaccacattctggtaatcgtcataataatctcagtgggtgcctttaccatcatagtggtg
gtggttggagcatttctgtgcactcgacgcaccacctcccagcagaaaaagaaacgagct
gcatgtaagtccaccaatggctcacacaagtacaaaggcaacaccaaggatttaaagcca
ccagatctgtggatccaccacgagcggctagagcttaagcctatggacaagtctcctgac
cccaacccagtcatgacggacactcctattccacgtacatctcaagatatcacacctgtt
gacagtaccttggataatccagtgcttcagagacgtaattcatatcgtggccatgagtca
gaggacaacatgtctacactggcaggccgtcggggaatgaggcctaagatgatgatgcct
ttcgacactcagcctcctcagcctgtgatcagtgctcatcccatccattcccttgataac
cattatcaccattatcacctggataccctgacctcacccactcatggccacctgcatcac
caacacagccctcggtccatctccacccccatctctcatctagacgggtccaattccaca
gagtccgtgagccgcaccattgccagtacggagcttctccctgctgcctctgcacaaccc
gtctactcagtggaaccctctgagacagaagtcagctaccacagctcagctactgaggag
gagccgaatacgtacccacccactgcccatgtgcgaccaacacacccactcaagagtttt
gctgtgccagccattactcctcacaaccctacctttgagtcaccagctttgccaagcacc
cccctacttgcgcaaacagggcctcattcggttaagactgcttccattggcacacttggt
agaacccgaacccccatggttgttacagtgcctagtgccccagatgcgccagagagcagc
aagatgttggaggatccagaaaatagctacaagacagatgtgctgacagaggagatggct
catttggagggcctgatgaaagacctaaatgccatcactaccacctga
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