Sardina pilchardus (sardine): 134097303
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Entry
134097303 CDS
T10667
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134097303 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134097303 (hbs1l)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134097303 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
Motif
Other DBs
NCBI-GeneID:
134097303
NCBI-ProteinID:
XP_062406151
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Position
12:12998688..13036226
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AA seq
702 aa
AA seq
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MSRHRNVRGYNYDEDLDDDDVYGQSVDDDFCISPATAAQFIYSRQERQTPQVERVEEEQD
EEGEIPMSPSIGPTLDPLDQGRLYSCLDHMRAVLGDTLSDSVLTQAAMRHDFDPQRALDA
VLSEESAHHAHTEAPPPPKPTQPPTPAPLPQRPERERGKGRENRNKVESEVIPKVARMTV
SGKKQTMGFDVPGMEENGVQNPSVRRGPSPNPEAVAMTPAPTPASAPAKRPETPVKNQGS
GDEPAPAVTPVTPRTTGKSKTQLNIRAELDKRQGGKPLLNMVVIGHVDAGKSTLMGHLLY
LLGNVNKRTMHKYEQEAKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETATKVVTL
MDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLA
VAVNKMDQVSWQQERFKEITSKLGHFLKQAGFKDSDVFYVPTSGLSGENLTSKSTVAELV
SWYKGPSLVEQIDGFKPPQRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGERILA
MPPNETCTVKAITLHDEPLDWAAAGDHVTLFVTGMDIIKINVGCVFCDPKEPIKACTRFR
ARVLLFNIEVPITQGFPVLLHYQTISEPATIRKLVSILHKSSGEVLKKKPKCLGKGQNAV
VEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcacagaaatgtccgcggttataactacgatgaagacttagatgatgacgac
gtgtatgggcaatccgtggatgatgacttctgcatctctcccgctacggctgcccagttc
atctactctcgccaggagaggcaaactcctcaggtcgagcgggtggaggaggagcaggat
gaggaaggtgaaattcctatgtcaccctccataggccccactctggatccactggatcaa
ggtcggctctactcgtgtctggaccacatgcgagcggtgctgggggacacgctgtccgac
tccgttctgacccaggcggccatgcggcacgacttcgacccacagagggcgctagacgcg
gtcctgtccgaggagagtgcgcaccacgcacacacagaggcgccgccaccacccaaaccc
acacagccgcccacacccgcgcccttaccgcagagaccagaacgagagagaggtaaaggc
cgggagaatcgcaacaaagtggagtccgaggtcatccctaaagtcgcccgcatgaccgtc
tctggcaagaagcagaccatgggctttgatgtgccaggcatggaggagaatggcgtccag
aatccttctgtgcgccggggccccagtcctaacccagaggcggttgccatgacgcctgcc
cccacgcctgccagtgcccctgccaagcgcccagagacgcccgtcaagaaccagggcagc
ggtgacgagcctgcgcccgctgttaccccggttacgccccgcaccaccggcaagagcaaa
acacaactcaacatccgcgccgagctggacaagcgacagggagggaaaccactactcaac
atggtggtcataggccatgtggacgcagggaagagcacattgatgggccacctgttgtac
ctgctggggaacgtgaacaaaaggaccatgcacaagtacgagcaggaggccaagaaggcc
ggcaaagcctccttcgcatacgcctgggtcctggatgagaccggggaagagagagacagg
ggagtaactatggacgtggggatgaccaagtttgaaaccgctactaaggttgtgacccta
atggacgcccctggacacaaggacttcatccccaacatgatcactggggccgcacaggct
gatgtggcggtgctggtggtggatgcgagtcgtggggaatttgaggcgggattcgaggca
ggcggtcagacgcgggagcacgccctcctggtccgctcgctcggagtcacgcagctcgcc
gtcgccgtcaacaaaatggaccaggtcagttggcaacaggaacgatttaaagaaatcacc
agcaaacttggtcatttcttgaagcaagcaggctttaaggactctgatgtgttctacgtc
cctacgagtggactctcaggagagaacctgaccagcaagagcactgtggctgagctcgtc
tcctggtacaagggcccctccctggtggagcagattgatgggtttaagcctcctcagaga
tcagtagagaagcctttccggctctgtgtgtctgacgtcttcaaagaccagggctctggg
ttctgtgtgacggggaagattgaagcgggctacgttcagacgggagagcgcatccttgcc
atgccccccaatgagacctgcactgttaaagctatcactctacatgatgagcccctggac
tgggctgctgccggtgaccatgtgaccctgtttgtgacggggatggacatcatcaaaata
aatgtgggttgtgtattctgtgatcctaaagagccaatcaaagcctgtactcgattccga
gcccgggttttgctgttcaacattgaggttcccattacacaaggctttcctgtactgttg
cactaccagacaataagtgagccagcgaccatcaggaagttggtgagcatcttacacaaa
agcagcggagaagttttgaagaagaaaccaaagtgtctgggtaaaggtcagaacgcagtg
gtggaaatccagactcagaggccagtcgctctggagctctacaaagacttcaaggagcta
ggccgcttcatgctccgatacgtgggctcaactatcgccgccggggtcgtcaccgagatc
aaagaatga
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