Sardina pilchardus (sardine): 134097611
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Entry
134097611 CDS
T10667
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03008
Ribosome biogenesis in eukaryotes
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134097611 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
134097611 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spil03021
]
134097611 (xrn2)
03019 Messenger RNA biogenesis [BR:
spil03019
]
134097611 (xrn2)
03009 Ribosome biogenesis [BR:
spil03009
]
134097611 (xrn2)
03016 Transfer RNA biogenesis [BR:
spil03016
]
134097611 (xrn2)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134097611 (xrn2)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
134097611 (xrn2)
Ribosome biogenesis [BR:
spil03009
]
Eukaryotic type
Pre-60S particles
RNases
134097611 (xrn2)
Transfer RNA biogenesis [BR:
spil03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
134097611 (xrn2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF8363
Motif
Other DBs
NCBI-GeneID:
134097611
NCBI-ProteinID:
XP_062406518
LinkDB
All DBs
Position
12:10668028..10702018
Genome browser
AA seq
980 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEEKSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIIRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELVEEKQKMREEIIGRGGYLPPDEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLSNDPGWRNVTVFLSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQVGHEIKDCQGMPREKQGEHDEFAGSIPVSEQE
FIFIRLSVLREYLERELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTESGFVNLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKD
KKKRMKMQQQHQQPSFMLSGQFAPQALGGRDRPGAVQNARHTAYDMRMQATNQHNMDAAQ
SLKASIKNGNKGNDGVDGRGVKRKAEDSDDEPEPEDNVRLWEDGWKQRYYKTKFDVDVSD
ESFRRKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKDLCKDFEKGTKP
FKPLEQLMSVFPAASGNFLPETWRALMSDPDSQIIDFYPDDFAIDLNGKKYAWQGVALLP
FVDERRLRAALAEVYPNLTAEEIKRNSLGSDIMFVEKSHPLCDFMHELYRSESHEGTQIP
AELCHGIQGTLNLDEDAILPDKPVESPIPLLRDLAQNSAIGIKFQDPQFDEDFVFKAVLL
AGAKLAAKVLKPGDWERSSNGPWRPQLGFNPNRQQAHLGQSAFRALGHHTNRNQGGAGLC
GAAPPGHHRGGQYSNAPPPSNYNQGNYNRQHHRDSHQSFPPQHSRQHGFPQPPPPSNPPL
FPRPPYGGGQGWDRAMQSQGAAFQHNTQRGHHGGHGGYQQHDNRRDNRQDDQRDDRRQQQ
GYNQGRNYALPPPTRRYQWS
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccctgcatttttccgttggttgagtaggaaatatccttccataatagtgcat
tgccttgaggagaagtccaaggaatgcaatggtgtgcgaatacctgttgacactagcaag
cccaatcccaatgaagtggagtttgacaacctgtatctggatatgaatggaattatccat
ccgtgcacacatcctgaggacaagccagcgcccaaaaacgaggatgagatgatggtggcc
attttcgaatacatcgatcgactcttcaacatcattagaccccgcagagttctgtacatg
gctatagatggagtcgcccctcgtgccaaaatgaatcagcagcggtcaaggcgattccga
gcctctaaagaaggggcggaacttgtggaggagaaacagaagatgagggaagagatcatc
gggagaggaggataccttccgccagatgagatcaaggagaggtttgacagcaactgcatc
actccaggaacagagtttatggacaacctggcaaaatgtctccggtattacgtagctgac
agattgagcaatgatccaggatggcgcaacgttacagttttcctgtcagatgccagtgtt
cctggagagggtgaacataaaattatggattacatccgaaggcaaagggctcagccacat
catgacccaaacacgcatcactgtctttgcggcgctgacgccgacttgatcatgttgggg
ctggccacacacgagcctaacttcaccatcatccgtgaggagttcaagcccaacaagcca
agaccctgtgccctctgtaaccaggtcggccatgagatcaaggactgccagggaatgccc
agggagaagcaaggcgagcatgatgaatttgcaggcagcataccagtctctgaacaggag
ttcatcttcattcgtttgtcagttttgcgagagtacttggagcgagagttgaccatggct
agcctgccgtttccgtttgactttgagcggagtgtggatgactgggtcttcatgtgcttc
tttgttggaaatgatttcctgcctcatctaccgtccctagaaatcagagaaggcgctatc
gatcgactggttggaatctataaagacgtcgtacacaagacggggggttacctcacagaa
agtggcttcgtcaaccttgagcgagttgagctgatcatgcaggctgtaggagtggccgaa
gacaacatcttcaagaagcgcaaagacgatgatgagagtttcaaaaggaggatgaaggac
aagaagaagcgaatgaaaatgcagcagcagcatcagcagccatccttcatgctgtccggc
cagttcgctccccaggctctggggggcagagaccgaccaggggcagtgcagaacgcccgt
cacacggcctatgacatgaggatgcaggccacaaaccagcacaacatggatgcagcccag
tccttgaaagcttcaataaagaacgggaacaagggcaacgatggcgtagacggccgcgga
gtgaaaaggaaagccgaggacagtgacgacgagccggaacccgaggacaacgtcaggttg
tgggaggatggctggaaacagcgctactacaaaacaaaattcgacgtggacgtgagtgat
gaatccttccgcaggaaagtcgtgaagtcctatgtggaaggcctgtgctgggtgctgcgc
tactactaccagggctgtgcctcctggaagtggtacttccccttccactatgccccgttt
gcatcggacttcaaagacatcaaagacctgtgcaaagactttgagaagggaaccaagccg
ttcaagcctctggagcagctgatgagtgtgtttccggctgccagtggaaacttcctgccg
gagacctggagggccttgatgtccgacccagactcccagatcattgacttctaccccgac
gactttgcaattgatctcaatgggaagaaatacgcttggcagggtgtggccttgcttccc
ttcgtggatgagcgcaggctgcgggctgccttggcagaggtgtaccccaacctcactgca
gaggagattaaaaggaacagcttgggaagtgacatcatgtttgtggaaaagtcccacccc
ctatgtgacttcatgcatgagctgtaccgctccgaatctcacgagggcactcagatccct
gcggaattatgccatggaatccaaggtacattaaatcttgacgaagatgctattctacca
gataaaccagtagagtctcctattcccttgttgagagacctggcgcagaacagtgccatt
ggaattaaattccaggacccacaatttgatgaagattttgtgttcaaggcagtcttactc
gctggggccaaacttgcagctaaagtgctgaaacctggagactgggagagatccagcaat
ggaccatggagacctcagcttggcttcaaccccaatcgccagcaggcccacctgggccaa
tctgctttcagagccttgggacatcatacaaacaggaaccaaggtggtgccggcctgtgc
ggtgcggcccctcctggacaccacaggggtggccaatacagcaatgcccctcccccaagc
aactataaccagggcaactataaccgccaacatcatagagattcacatcagtctttccca
ccccaacattccaggcaacatgggttcccacagcctcctcccccatccaacccaccactt
ttcccaaggccgccgtacggaggaggccagggctgggaccgggcgatgcagtcgcagggc
gccgccttccagcacaacacgcagcgaggccaccacggaggccacggggggtaccaacag
cacgacaaccgccgagacaaccggcaggatgaccagcgcgatgaccgcaggcagcagcag
ggctacaaccagggacggaactatgccctgccaccacctacaagaagataccaatggagt
tga
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