Sardina pilchardus (sardine): 134097614
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Entry
134097614 CDS
T10667
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134097614 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spil03021
]
134097614 (cpsf3)
03019 Messenger RNA biogenesis [BR:
spil03019
]
134097614 (cpsf3)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134097614 (cpsf3)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134097614 (cpsf3)
U7-dependent histone pre-mRNA processing factors
134097614 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
134097614
NCBI-ProteinID:
XP_062406521
LinkDB
All DBs
Position
12:complement(11220955..11227451)
Genome browser
AA seq
690 aa
AA seq
DB search
MAAKRKADVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGCLADK
KCAQGQRVSGILVKRNFSYHILAPSDLSNYTELAMSTVKQTQAIPFTGPYSLLVNQLRHL
AGDVEEVDASEKTTLKVFKNITLLHEAGMVTLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMDMKPDIVDVEEFQRRLEIMFQDMFGEDCVDFKDPKNLSVTVDGKTAYINLESRTVD
YEEGSADEETIKEMVEVAVQRLYDAMNPTM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaacgcaaagcagatgtcatcgttccggcggaggagagcgaccaactcctt
ataagacctcttggggccggtcaagaagtcggcagatcatgtattattttggaattcaag
ggacgaaagatcatgctggattgtggcatccaccctggtttggaaggcatggatgcgctc
ccgtatattgatttgattgatccagcagagattgatttgcttctcatcagtcatttccat
ttggaccactgtggagctttgccctggttcttgcagaagacaagtttcaaaggaaggacc
ttcatgacccatgcaaccaaagccatttaccgctggttgctgtcagattacgtcaaagtc
agcaacatctccgctgatgacatgctctacacggagactgacttagaggagagcatggat
aagattgagaccatcaacttccatgaggtgaaggaagtggctggcattaagttctggtgc
taccatgctggacatgtgttgggagctgccatgttcatgattgagattgctggtgtaaag
ttgctgtacacaggtgacttctctcgtcaggaggaccggcatctcatggctgctgaaatc
cccagtgtgaagcctgatatcctcatcacagaatccacctatggcacacacattcacgaa
aagagggaggagagggaggcccggttctgcaacacggtccacgacattgtcaacagagaa
ggccgctgcctcatccccgtctttgccttggggcgagcccaggagctcttgctcattttg
gatgagtattggcagaaccatccagagctgcatgacatccccatctactacgcctcctcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaacgccatgaatgacaagatc
cgcaaggccattaacatcaacaacccctttgtcttcaaacacatcagcaacctgaaaagc
atggatcactttgatgacattgggcccagtgtggtgatggcctcccctggtatgatgcag
agtggcctctccagggagctctttgagagctggtgcaccgacaagcggaacggcgtcatc
atcgctggttactgtgtggaaggaacactggcaaagcacatcatgtcagagccagaggag
atcaccaccatgtcgggccagaagctccagctcaagatgtctgtggactacatctccttc
tccgctcacacagactaccagcagaccagcgagttcattcgggccctcaaaccaccacac
gtgattctggtccacggggaacagaacgagatggctcgtctgaaagcagctctaatcaga
gagtatgaagataacgacgaggtccacatcgaggtgcacaacccgcgaaacacagaggcc
gtcacactgaacttcaggggggagaaactggccaaggtgatggggtgccttgctgataag
aagtgtgcacagggccagcgagtgtctggcattctggtgaagcgcaacttcagctaccac
atccttgccccatcggacctgtccaactacacagaactggcgatgagcactgtgaagcag
acccaggccatccccttcactggaccctactctctcctggtcaaccagctacgacacctg
gcaggagacgtggaggaagttgacgcatcggagaagaccacactcaaagtgttcaagaac
atcacactgttgcacgaggctggtatggtgaccctggagtggatagccaaccctttgaat
gacatgtatgctgatgcagtcactacggtagtgctggaagtccagtccaaccccaaagca
cagaaagtgatggatatgaagccggacatcgtggacgtggaggagttccagaggaggctg
gagattatgttccaggacatgtttggagaagactgtgtggacttcaaggatcctaagaac
ttatcagtgactgttgatgggaagacagcctatattaatcttgagagtcggactgtagat
tatgaggagggcagtgcagatgaagaaaccatcaaggagatggtggaggtggctgttcag
cggctctacgatgccatgaacccgacgatgtga
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integrated database retrieval system
