Sardina pilchardus (sardine): 134097841
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Entry
134097841 CDS
T10667
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134097841 (ddx1)
03016 Transfer RNA biogenesis [BR:
spil03016
]
134097841 (ddx1)
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134097841 (ddx1)
Spliceosome [BR:
spil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134097841 (ddx1)
Transfer RNA biogenesis [BR:
spil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
134097841 (ddx1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF4882
Motif
Other DBs
NCBI-GeneID:
134097841
NCBI-ProteinID:
XP_062406774
LinkDB
All DBs
Position
12:complement(14846643..14857408)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPL
IQIVYETMKDQQEGKKGRAAVKTGGAVFSKWQMNPYDRSTAFAIGPDGMCCQSREFKEWH
GCRSTQGVTKGKYYYEVSCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKSQISFSKNGIDLGLAFTIPAQLKDQAFFASCVLKNAELKF
NFGGESFKNKPAEGFVALDQAPDGHAVKSSQTGAAKVSQVKVMNNAPKAIIIEPSKELAE
QTHRVVNQFKKYVDNPKVRDLLVMGGVAAKDQLAVLEQGVDIVVGTPGRMEDLISTGKLN
LSQVRFFVLDECDGLLSAGYTDFIMKIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDRLWEKLGKTHIRTDEVHAKDNTRPGAN
SPEMYSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFVQQGGGPDRKGHQF
SCVCLHGDRKPNERKSNLERFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKQLLS
EVEEHLNCIITQCEPDLKVPLDEFDGKVTYGQRRATGGGSYKGHVDVLAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtttggtgaaatgggcgttatgccagaaatcgcgcaagcagttgaggagttg
gattggctcctcccgactgacatccaggcggagtctattccattaattcttggaggagga
gacgtccttatggcggctgaaacgggcagtggaaaaactggcgccttcagcatccctctg
atccagattgtgtatgagaccatgaaggaccagcaggaagggaagaagggcagagctgcc
gtcaagactgggggtgcagtcttcagtaaatggcagatgaacccttatgacagaagcaca
gcttttgctatcggcccagatggtatgtgttgccagagccgcgagttcaaggaatggcac
ggctgtcgttcaacccaaggcgtcactaaagggaagtactactacgaggtgtcttgtcat
gatcaagggctgtgcagagttggttggtcaacaagtcaggctgcactggatttaggtact
gataaatatggctttggctttggaggcactgggaagaaatccaacaacaagcagtttgac
agctacggagaggagttcactatgcacgataccattggatgttacctggatctagacaaa
tctcagatttccttctctaagaatggtattgacctgggtctggccttcaccatcccagca
cagctaaaagaccaggcattctttgcttcctgtgttctcaagaatgctgagttgaagttc
aactttggaggcgagagcttcaagaacaagcctgctgagggctttgtagctctggatcaa
gcacctgatggacatgcagtcaaatccagccagacaggggccgcaaaagtaagccaggtg
aaggttatgaataacgcccctaaggccatcatcattgagccgtcgaaagagttggctgag
cagacccaccgcgtggtcaaccagttcaagaagtacgtggacaaccccaaagtgagggat
ctgctggtgatgggtggagtggcagctaaagatcagcttgctgtgctggagcaaggggtg
gatattgtagtgggcaccccaggaaggatggaagatctcatctctacagggaagctcaat
ctctcccaagtccgcttctttgtgctggacgagtgtgatggtcttctgtcagcgggctac
acagacttcatcatgaagatctacaaccagatcccccaggtcacctctgatgggaagaga
cttcaggtgattgtttgctcggcgacgctgcactcgttcgacgtgaagaagctgtcggag
aagatcatgcacttccctacctgggtggacctgaaaggagaggactcggtccccgagacc
gtccatcacgtggtggtccccgtgaaccccaaaaatgaccgtctgtgggagaagctgggc
aagacccacatcaggactgacgaggttcatgccaaggacaacacacgaccaggagccaac
agcccagagatgtactcggaggccattaagatcctaaagggggagtacacggtgcgcgcc
atcaaggagcacaagatggaccaggccatcatcttctgcaggaccaagatcgactgtgac
aacatggagcagtactttgtccaacaggggggaggaccagatagaaaaggccaccagttt
tcctgtgtgtgtctccatggtgaccgaaagccaaatgaacgcaagagcaacctggagcga
ttcaagaaacaggaagtgaagttcctgatttgtacagatgtggcagctagaggcatcgac
atccacggtgtgccctatgtgatcaacgtcactttgcccgatgagaaacagaattacgtt
caccgcattggcagagtgggtcgagctgagaggatggggttggccatttctctggttgcc
atggagaaggagaaggtgtggtaccacgtgtgcgcaaacagaggaagaggatgctacaac
accaggctgaaggaggatggcggttgcactatctggtacaatgagaagcagctgctgtct
gaggtggaggagcatctgaactgcatcatcacacagtgtgagcctgacctcaaagttccc
ttggatgagtttgatggcaaggtgacctacggccagcgcagagcaacaggaggtggtagt
tataagggacatgtggatgtcttggctccgactgtgcaggagttggccaacctggagaga
gaggctcagacatccttcttacacctggggtacctgcccaaccagctgttcaaagccttc
taa
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