KEGG   Sardina pilchardus (sardine): 134098070
Entry
134098070         CDS       T10667                                 
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
  KO
K10653  tripartite motif-containing protein 54
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:spil00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134098070 (trim54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:spil04121]
    134098070 (trim54)
Ubiquitin system [BR:spil04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    134098070 (trim54)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4 zf-C3HC4_2 RING_XB3-XBAT31 zf-B_box zf-RING_5 zf-RING_6 zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 Sina_RING CYP38_PsbQ-like TRIM_CC DUF5799 CoiA_N Prok-RING_4 DUF5915 SMBP zf-RING_11
Other DBs
NCBI-GeneID: 134098070
NCBI-ProteinID: XP_062407001
LinkDB
Position
12:complement(27498312..27520581)
AA seq 364 aa
MNFGLGFKPPVGESMGTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDVFQASS
PMWQSRGPTAVTTGGRFRCPSCRHEVILDRHGVYGLQRNLLVENIIDIYKQESSRPLHPP
QEQQQQQQQLMCEEHEDERINIYCLSCERPTCSMCKVFGQHKDCEVAPLQNVYKRQKTEL
SDGIAILVAGNDRMQAIISQMEDICRNIEENGRRQKQTLCDQFDGLYSVLEERKKELVES
VSREQDRKLRHARSLLRRHGDHLEAAVKLVETAIQSMEEPHMPVFLQCAKDVFKKITAMA
EASNLERLEAGYESMAHFVVDTDDAADVLRNIDFQTGSQNEDDDDLEEEGEDLPGGVDGD
PARY
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgaattttggcctgggcttcaagccgcccgtgggggagtcgatgggcaccatggacaac
ctggagaagcagctcatatgccccatctgtctggagatgttcaccaaacccgtggtcatc
ctgccctgccagcacaacctgtgcaggaagtgtgccagcgacgtcttccaggcgtccagc
ccgatgtggcagagccgcggccccacagccgtgaccaccggggggcgcttccgctgccca
tcctgccggcacgaggtgatcctggaccgccacggcgtctacggcctgcagcgcaacttg
ctggtggagaacatcatcgacatctacaagcaggagtccagcaggcccctgcaccctcca
caggagcagcagcagcagcagcagcagctgatgtgcgaggagcacgaggacgagcgcatc
aacatctactgcctgagctgcgagaggcccacctgctccatgtgcaaggtgttcggccag
cacaaggactgcgaggtggcgccgctgcaaaacgtctacaagcgccagaagacagagctt
agtgatggtatagcgatcctggtggcaggaaatgacaggatgcaggccatcatctcccag
atggaggacatctgcaggaacatagaggagaacgggcggcggcagaagcagacgctgtgc
gaccagttcgacgggctgtacagcgtcctggaggagcgcaagaaggagctggtggagagc
gtgagccgcgagcaggaccgcaagctgcgccacgcgcgctcgctcctccgtcgccacggc
gaccacctggaggccgccgtcaagctggtggagacggccatccagtccatggaggagcca
cacatgcccgtgttcctgcagtgtgccaaggatgtgtttaagaagatcacggccatggcg
gaggcttccaacctggagcggcttgaggccggctacgagagcatggcccactttgtcgtc
gacacggacgacgccgccgatgtgctcaggaacattgacttccagacaggctctcagaat
gaggatgatgatgatctggaggaagagggtgaggacctgcctggtggtgtagatggagac
cctgcccgatattaa

DBGET integrated database retrieval system