Sardina pilchardus (sardine): 134099025
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Entry
134099025 CDS
T10667
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134099025 (ddx6)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134099025 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
134099025 (ddx6)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134099025 (ddx6)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134099025
NCBI-ProteinID:
XP_062407681
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Position
13:complement(4532816..4554309)
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AA seq
480 aa
AA seq
DB search
MSTARTESQVILGLSNQNGQLRATGKPAGGPGGGSPQQPASQVKASSTINNGSSQPAPTN
TVIKPGDDWKKNLKVPPKDMRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQ
EESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMVIVPTRELALQVSQI
CIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVSQVQMI
VLDEADKLLSQDFVLMMEETLSFLSKQRQILLYSATFPISVQKFMNSHLQKPYEINLMEE
LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFY
IHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIG
RSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEALKL
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgcaagaacagagagccaagtgattttgggcttgtctaatcagaatggccag
cttcgggccacaggaaagccagcaggtggcccaggtggagggagtcctcaacaaccagca
agccaagtgaaggcctccagcacaatcaacaatggcagttcccagccagcaccaacaaac
acagtcatcaaacctggagatgactggaagaaaaacttaaaggtccctccaaaggacatg
agaatgagaacttcggatgtgaccgcgacaaaggggaatgaatttgaagattactgcttg
aagcgggaattgcttatggggatctttgagatgggctgggagaaaccttcccctattcag
gaggagagcattcctattgctttgtcagggagggacattctggccagagcaaagaacggc
actggaaagagcggcgcctacctcatccccttacttgaacgcattgacctgaagaaggac
tgcatacaagcaatggtcatcgttcctactcgcgagctggccctgcaggtgagtcagatc
tgcatccaggtcagcaaacacatgggcggagtcaaggttatggcaactactggtggcacc
aaccttcgtgatgacatcatgcgacttgatgagacggtacatgtagtcattgccacacca
ggaaggatcctggacctcatcaaaaagggagtggccaaagtcagccaagtgcagatgatc
gtgttggatgaggctgataagctcctgtcacaggactttgtgctgatgatggaggagact
ctgagcttcctatccaagcaaagacaaattctgctgtattctgctacttttcccatcagt
gtgcagaagtttatgaattcccatctgcagaagccttacgagattaacctaatggaggag
ctgactctgaagggtgtgactcagtattacgcctatgtcactgaaaggcagaaagtacac
tgtcttaatactctgttctctaggctccaaattaatcaatcaataatcttctgcaactcg
tctcagagagttgagctcctggcaaagaaaatctctcaacttggctactcctgtttctac
attcacgcaaagatgagacaggaacaccgtaaccgtgtattccatgacttcagaaatggt
ctctgccggaatcttgtctgcactgatctcttcaccagaggaattgacattcaagctgtg
aatgtggtgataaactttgactttcccaagcttggagagacataccttcatcgtattggc
agatctggacgctttggacatttgggtctcgccatcaatctgatcacctatgacgatcgc
ttcaacctgaagggtatagaggagcagttgggaactgagatcaaacctatccccagcagc
atcgataagagcctctatgtggccgagtaccacagtgagagcggagaggcattgaagctg
taa
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