Sardina pilchardus (sardine): 134099476
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Entry
134099476 CDS
T10667
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03022
Basal transcription factors
spil03420
Nucleotide excision repair
Brite
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134099476 (ercc2)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
134099476 (ercc2)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
134099476 (ercc2)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
134099476 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134099476
NCBI-ProteinID:
XP_062408347
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Position
13:711689..833070
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AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYQ
RVHPLEVTKLIYCSRTVPEIEKVVEELRKLIEFYVKETGKENNFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPSLPSCCFYEEFDAVGRQVPVSPGVYNLDDL
KDYGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELAKNSVVVFDEAHNID
SVCIDSMSVNITRRTLDRCQLNVDTLQSTIQRIKETDAAKLKQEYRQLLEGLKEASVARE
TDIFLSNPVLPDEILQEAVPGSIRTAEHFIGFLKRFLEYLKARLRTHHVVQESAPQFLKD
IFEKVCIDRKPMRFCAERLHSLLRTLEIADIADFSAVTLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDASIAIKPVFERFQTVIITSGTLSPLDIYPRILDFCPVTMAS
FTMTLARTCLCPLIVGRGNDQVAMSSKYETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENVQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEQITDSSLNLSIDETVQLSKHF
LRQMAQPFRREDQLGLSLLTLEQLQSEEMLQRITQLAHQS
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagttaaatattgaaggactgttggtttactttccgtatgactacatttaccctgaa
cagtattcttatatgctggaactcaagagaacacttgatgctaagggacatggtgttctg
gagatgccatcagggacgggaaaaactgtttctcttctgtccctaattgttgcatatcag
cgagttcatcccctggaggtaaccaaactcatttattgttcacggacagttcctgagata
gagaaggttgtggaggaattgaggaaacttattgaattttatgttaaagagaccggcaag
gaaaacaacttcttagcactggctctctcttcccgaaaaaacctgtgtattcatccagag
gtcagttcactgcgttttgggaaggaggtggatgggaagtgtcacagtctgactgcttcg
tatattcgagcacaacgccatagtaaccccagcctaccatcctgctgcttctatgaagag
tttgatgcagtgggaaggcaagtgccagtttcacctggtgtatacaacctggatgatctg
aaggattatgggcgcagaaagggatggtgtccctactacctggcaagatactcaatcctt
catgcaaatataatagtgtacagctaccactacctcttggacccaaagattgcagacctg
gtctccaaagagcttgctaaaaactcagtggttgtctttgatgaagcccacaacattgat
agtgtatgcattgattccatgagtgtcaacatcacacgcaggaccttggatcgctgtcaa
ctcaatgtggacactttgcaaagcacaattcagaggatcaaggaaacagacgcagcaaaa
ctcaaacaggagtataggcagctgctggaagggctgaaggaggctagcgttgctagagaa
acggacatcttcctgtctaacccagtgcttccagatgagattcttcaagaggctgttcct
ggcagcatccgcactgcagagcactttataggtttcttgaagcgtttccttgagtatttg
aaggccagattacgtactcatcatgtggtacaggaaagtgctcctcagtttctcaaagac
atctttgagaaggtgtgcattgatcgtaaacccatgagattctgtgctgaaagattgcac
tccttactacgaacactggagattgcagacattgctgacttctctgctgttacactcatc
tcacattttgccaccttagtcagcacctacagtaaaggtttcacaatcatcattgagccc
tttgaagataagactcccaccattgccaatcctgtgctgcacttcagttgtatggatgct
tctattgccatcaagccagtgtttgaacggttccaaacagtcatcatcacctcagggaca
ctgtctcctttggatatctatccccgtattctggatttctgtccagtcactatggcatct
ttcacaatgacactggcacgaacctgtctgtgtcccctgattgttggacggggcaatgac
caagtggctatgagttccaaatatgagacgcgagaagattttgcggtcattcgcaactat
ggcaacctgctactggagatgtctgccattgttccagatggcatagttgcatttttcacc
agttatgtgtacatggagaacattgtggcctcgtggtatgaacaggggatcctggaaaat
gtccaaaggaacaagctcattttcattgagactcctgatgcagcagaaaccagcatggct
ctggagaagtatcaggaggcttgtgaaaacggccgtggagccatcttgctgtccgtggct
cgtggaaaagtgtctgaaggaattgactttgtgcatcattatggacgtgctgttatcatg
tttggtgtcccatatgtttatacacaaagccgcattctcaaggctcgtttggagtacctt
cgagaccaatttcagattcgggagaatgacttcctgacttttgatgccatgcgtcatgct
gcacaatgcgttggccgagccatccgtggaaagacagactatggtctcatgatctttgct
gataaacgctatgctcgggctgataaaagagggaagctgccgcgatggatccaggagcag
atcactgacagcagtctgaacctctctattgatgagaccgtacagctgtccaagcacttc
ctacgacagatggctcagcccttcagacgggaggaccagctgggcttgtccctcttaaca
ttggagcagcttcagtctgaggagatgctccagcggattactcagctcgctcaccaatcc
tga
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