Sardina pilchardus (sardine): 134099509
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Entry
134099509 CDS
T10667
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134099509 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134099509 (prpf8)
Spliceosome [BR:
spil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134099509 (prpf8)
Complex C
U5 SnRNP specific factors
134099509 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
134099509
NCBI-ProteinID:
XP_062408383
LinkDB
All DBs
Position
13:8974097..8990621
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPFRGVPGGMPPGINPPAPIPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDTEEDGSCVEWFYEHQPLKDNTKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDKNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNMRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
STEAAHPIRLYCRYIDRIHIFFRFSADDARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYQ
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctttccccttcagaggtgtcccaggcgggatgcctcctggcatcaacccg
ccagccccgatcccagattatatgtccgaggaaaaactgcaagagaaagctcgcaaatgg
cagcagctgcaggccaagcgctactcggagaagcgcaagtttgggtttgtggatgcacag
aaggaagacatgcctccagagcatgttcggaaaatcataagggatcatggggacatgacc
aacaggaagttccgtcatgacaaaagagtttatcttggggccctgaagtacatgccccat
gcagtgctgaaactgcttgagaacatgcccatgccatgggaacagatcagggatgtaccc
gtgctctaccacatcactggagccatttcctttgtcaatgagatcccctgggttattgag
ccagtctacatagcacagtggggcaccatgtggatcatgatgcgtcgtgagaagagagac
aggcggcacttcaagcgcatgcgcttcccgcccttcgacgatgaggagcctccgctggac
tacgcagacaacatcctggatgtggagcccctggaggccattcagatggagctggacacg
gaggaggatggctcctgtgtggagtggttttatgagcaccagcccctcaaagacaacacc
aaatttgtgaatggaaccacgtatcgtcggtggcagttcactctgccaatgatgtccacc
ctgtaccgtctggccaatcaactgttgacagacttggtggacaagaactacttctacctg
tttgacctgaaggcgttcttcacctccaaagccctgaacatggccatccctgggggcccc
aaattcgagccccttgtccgagacatcaatctacaggacgaggactggaatgagttcaac
gacatcaacaagatcatcatccggcagcccatcaggaccgagtacaagattgcattcccc
tacttgtacaacaatctgccccaccacgtgcatctcacctggtaccacaccccaaatgtg
gtgttcattaagacagaggaccctgatctgccagctttctactttgacccactgatcaac
cccatttcccacagacactcagtcaagagccaggagcccctgcctgatgacgatgaggag
tttgagctgcctgagtttgtggagcccttcctcaaagagacgccactctacactgacaac
accgccaatggcatcgccctgctctgggcccctcgccccttcaacatgcgctctggaaga
acccgccgtgccattgacattccactcatcaagaactggtaccgggagcactgccccgca
ggtcagcctgtgaaggtgcgggtgtcctaccagaagctcctgaagtactatgtgctcaac
gctctgaagcacaggccacccaaagcacagaagaagaggtatctgttccgctccttcaag
gccaccaagttcttccagtccaccaagctggactgggtggaggtcgggctgcaggtgtgc
agacaaggctacaacatgctgaacctgctcattcacagaaagaacctcaactacctgcat
ctggactacaacttcaatctcaagcctgtcaagaccctgaccacaaaggaacgtaagaag
tccagattcggaaacgcgttccatttgtgccgagaggtgcttcgtctcagcaagctggtg
gtggacagtcacgtgcagtaccgactgggcaacgttgacgctttccagttgtcggacggc
ctgcagtacatcttcgcccacgtgggccagctgacgggcatgtaccgctacaagtacaag
ctgatgagacagatccgcatgtgcaaggacctgaagcatctcatctactaccgcttcaac
accgggccggtgggcaaaggccctggctgtgggttctgggccccgggctggcgagtatgg
ctgttcttcatgaggggcatcactcccctgttggagaggtggcttggaaacctgctggcc
aggcagtttgagggccgacactccaagggagttgcgaagaccgtaaccaagcagcgcgtg
gagtctcactttgacctggagctccgcgctgccgtgatgcacgacatcctggacatgatg
ccagagggcatcaagcagaacaaggccaggaccatcctgcagcacctcagcgagtcctgg
aggtgctggaaggccaacattccgtggaaggtcccaggcctccccactccaatcgaaaac
atgattctccgctacgtgaaagccaaagctgattggtggaccaacacggctcactacaac
cgtgagcgaatcaggcgaggtgccaccgtggacaagactgtctgtaagaagaacctgggt
cgcctcactcgactctatctgaaggccgaacaggagaggcagcacaactacttgaaggac
ggtccctacatcacagctgaggaggccgtggccatctacaccaccactgtccactggctg
gagagccgacgattctcccccatccccttccctcccctctcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaggaggcctacagtgtgaagtcgaggctgaac
cagtcccagcgtgaggagctgggtctgatcgagcaggcctacgacaaccctcacgaggcc
ctgtccaggatcaagcgtcacctcctcacccagagagccttcaaagaggtgggcattgag
ttcatggacttgtacagtcacctggtgcccgtgtacgacgtggagcccctggagaagatc
accgatgcctacctggaccagtacctctggtatgaggccgacaagcgccgactcttccct
ccctggatcaaacctgccgacacagagcctcctccactgctggtgtacaagtggtgccaa
ggcatcaacaacctgcaggacgtgtgggagaccgctgaaggggagtgtaacgtcatgctg
gagtctcgctatgagaagatgtacgagaagattgacttgacgctgctcaacaggctgctg
cgtctcatcgtcgaccacaacatcgccgattacatgactgccaagaacaacgtagtcatc
aactacaaggacatgaatcacaccaactcgtacggcatcatccgaggcctgcagtttgcc
tcgttcatcgtccagtactacggcctggtgatggacctgctggtgctgggtctgcacagg
gccagcgagatggccggacccccgcagatgcccaacgacttcctgagcttccaggacacg
tccaccgaggcggcccaccccatccgtctgtactgcagatacatcgaccgcatccacatc
ttcttcaggttctctgctgatgacgccagagatctcatccagaggtacctgacggagcat
ccagaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggccccgcgac
gccaggatgaggctgatgaagcacgacgtcaacctgggccgtgccgtcttctgggacatc
aagaaccgcctgccgcgctctgtgaccaccgtgcagtgggagaacagctttgtgtccgtc
tacagcaaagacaaccccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctg
cccaagtgccgcacaagctacgaggagttcacccacaaagatggagtgtggaacctgcag
aacgaggtgaccaaagagaggacggcccagtgcttcctgcgtgtggacgatgagtccatg
cagaggttccacaacagagttcgtcagattctcatggcctccggatctaccaccttcacc
aagattgttaacaagtggaacacggctctgattggtctcatgacctacttccgcgaggct
gtggtcaacacccaggagctgctggacctgctggtcaagtgtgagaacaagatccagacc
cgtatcaagattgggctgaactccaagatgcccagtcgtttccccccagtggtgttctac
acccccaaagagctgggaggactgggcatgctgtccatgggccatgtgctcatcccacag
tctgacctcaggtggtccaaacagaccgacgtaggcatcacccatttccgctcgggcatg
agccacgaggaggaccagctgatccccaatctgtaccgctacatccagccgtgggagagc
gagttcatcgactcccagcgagtgtgggccgagtacgccctcaagcgacaggaggccatc
gctcagaataggcgtttgacacttgaggacttggaggactcatgggacagaggcattccg
cgtatcaacaccctcttccagaaggacagacacaccctggcctatgacaagggatggaga
gtgaggaccgacttcaaacagtatcaggtgctgaagcagaaccccttctggtggacccac
cagaggcacgacggcaagctgtggaacctgaacaactaccgcacagacatgattcaggcc
ctgggaggtgtagagggcatcctggagcacacgctcttcaagggaacctacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaagaatccatgaaatggaagaag
ctgaccaatgcccagaggtctggtctgaatcagatccctaatcgacgtttcactctctgg
tggtccccaaccatcaacagagccaacgtgtacgtaggtttccaggtgcagttggatctg
actggaatcttcatgcacggcaagatcccaaccctcaagatctccctcattcagatcttc
agagctcacttgtggcagaagattcatgagagcattgtcatggatctctgtcaggtgttt
gatcaggagctggatgccctggagattgagacggtccagaaggagaccatccatcccagg
aagtcctacaagatgaactcgtcctgcgctgacattctgctcttcgcctcctacaagtgg
aacgtctcccgaccctctctgctggcagactcaaaggatgtcatggacagcaccaccact
cagaagtactggattgacatccagctccgctggggagattacgactctcacgacatcgag
agatacgccagggccaagttcctggactacaccacggacaacatgagtatctacccatcc
cccaccggcgtgctgattgcaatcgatctggcctacaatctgcacagtgcatatgggaac
tggttccccggagccaagcctctgattcagcaggccatggccaagatcatgaaggccaac
cctgccctgtatgtgctgagggagcgcatccgcaagggtctgcagctctactcctccgag
cccactgagccctacctgtcctcacagaactacggagagctcttctccaaccagatcatc
tggttcgtggatgacaccaatgtgtacagagtcaccatccacaagacctttgaaggtaac
ttgaccaccaagcccatcaatggagccattttcatcttcaacccaagaaccggacagctc
ttcctgaagatcatccacacatctgtgtgggcaggacagaaacgtctgggacagttggcc
aagtggaagactgctgaagaggtggctgccttgatccgctctctccccgtggaggagcag
cccaaacagatcatcgtcaccaggaagggcatgcttgaccctcttgaggtccacttgctg
gacttccccaacatcgtgatcaaaggctctgagctccagctcccattccaggcctgtctg
aaggtggagaagtttggagacctgattctgaaggccaccgagcctcagatggtcctgttc
aacctctacgacgactggctcaagaccatctcctcctacacggcgttctcacgtctgatc
ctgatcctgagggctcttcacgtgaacaacgaccgcgccaaagtcatcctgaagccggac
aagaccaccatcacggagcctcaccatatctggcccactctgactgatgaggagtggatc
aaggttgaggtgcaactcaaagacctcatccttgccgattacggcaaaaagaacaatgtg
aacgtggcgtctctgacccagtcggagatcagggacatcatcctgggtatggagatctcc
gcgccgtctcagcagaggcagcagatcgccgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacccagacgcgcaccgtcaacaagcacggcgacgagatcatcacctcc
accaccagcaactacgagacgcagaccttctcctccaagaccgaatggagagtcagggcc
atttctgctgccaacttgcacttgcgaacaaaccacatctacgtgtcgtccgatgacatc
aaagagactggctacacctacattctgcccaagaatgttctcaagaaattcatctgcatt
tctgacctacgagctcagattgctggttacctgtatggcgtgagccctccggacaaccct
caggtgaaggagatccgctgcatcgtgatggtgcctcagtggggcacgcaccagaccgtg
cacttgcccaatcagctgcctggacacgagtacctcaaggagatggagcctcttggctgg
atccacacgcagcccaacgagtcgccccagctctccccacaggacgtcaccacccacgcc
aaggtgatggccgacaacccttcctgggacggagagaaaaccatcattatcacatgcagc
ttcacacccggctcctgtaccctgactgcctacaaactgacccccagtggttatgagtgg
ggcaggcagaacaccgacaagggtaacaaccccaagggctacctgccctctcactacgag
agggtccagatgctcctgtccgatcgtttcctcggcttcttcatggtgccaggacaggtg
tcgtggaactacaatttcatgggtgtgcgccacgatcccaacatgaagtacgacctgcag
ctggccaaccccaaggagttctaccacgaggtccacaggccctcgcacttcctcaacttc
gcctccctgcaggagggcgagatctacaacgccgaccgagaggacatgtaccagtag
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integrated database retrieval system
