Sardina pilchardus (sardine): 134099774
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Entry
134099774 CDS
T10667
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04510
Focal adhesion
spil04512
ECM-receptor interaction
spil04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
spil04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134099774 (col4a3)
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134099774 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134099774
NCBI-ProteinID:
XP_062408757
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Position
13:complement(15067165..15122096)
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AA seq
1665 aa
AA seq
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MRRILNSFAPLRVSLLGILVFGFLEQASSEGGCVCSGKSLCHCDGVKGSKGEAGYPGFQG
LPGVMGYPGNEGSSGPRGPKGEMGFPGFPGPKGSRGLSGKPGFSGPPGQPGIPGNEGPMG
QQGIPGCNGTKGDRGFPGPPGLPGRDGFQGQPGLPGLKGETYYTEYAQEVKGRRGFPGVD
GEPGTPGPGGPPGPPGPMGPLGRPGTPGFQGLPGEKGLEGRSTGTPGRKGEKGSHGPPGT
PGVKGVKLYASGPKELKGEPGDVGPNGYPGQQGFTGAPGYQGIKGDQGEPGGPGKPGKEG
TPGAYGLQGEGGMTGPPGPPGIDGPPGEKGDLGPTGPPGDVVHITNGIKGSQGVPGSPGP
SGPTGTAGPPGFPGMKGEPAENIIGPDGKPGAPGIPGRKGEKGDPGPSYPGPPGPDGPPG
DPGTKGFPGPKGKADMTLGKGERGPPGRKGMQGPSGPKGGMGFPGDKGELCYVCVDRGPT
FGPKGPKGAPGPPGQSGRPGFTGLKGDQGVIGLPGSPGSQGSTGNPGVKGAAGPSGETVI
GVPPHEKGDPGDRGAFGPPGPEGIDGASGLPGPSGLPGDKGEPSKGEKGGRGPPGSPGLP
GRPGPVGSQGALGVGPPGPQGPKGNTGVLGLPGAPGDAGAKGEPGATFTTPGDVGPPGPK
GQPGQPGTPGSPGSPGLPGFPGLFGVKGQKGYSIQGPPGNIGPKGEEGEIGPAGPAGYGS
PGRPGPSGPPGMPGKEGERGFGPMGLKGRPGAQGDDGPPGPVGDSGPPGYPGHKGDPGRN
GSPGEMGSPGGSGPEGPKGFPGNCTAGGAGAPGETGPRGPQGPPGPTGERGNPGYPGPPG
KGFPGNQGQFGIPGFPGIPGPKGATGLKGFRGEDGKQGRPGSRGNQGSPGPVGPPGPSGN
PGQDGPPGPRGQPGIDGAIGTPGLRGQPGDRGALGLKGEDRTVPMPGDNGDPGPTGPPGP
TGDRGAPGAVGFDGINGKNGLPGSTGPPGPIGDPGADGLPGSPGVNGDSGSPGLIGFPGM
NGQKGEKGSSGSEGPAGVPGQKGIKGPKGSTSPPGPGSKGQKGERGDSGYPGGRGLRGPK
GSSGGSGRPGFKGLSGEKGVTGLPGLPGPPGRGGEKGSDGPPGSRGLPGPGGLPGTDGRP
GDPGPPGVRGNQGRDGIPGPAGEKGDIGAAEYGPSGPEGPKGITGMVGDVGFPGPYGPLG
PWGEVGDTGLPGLVGPRGPTGPPGLEGRCVDGPKGDRGPCGPHGPPGPKGSQGPQGPTGP
GPKGDNGEKGFPGPPGYTGYKGDTGQPGIPGSPGRPGFNGDKGAMGREGDQGPAGQKGVA
GPSGQQGCAGKKGDPGTKGVRGPDVFNEVILLPGDPGRPGPPGLKGEAGRPGEPGPDGRP
GPCSTKGSQGRPGFQGLPGYPGPKGDKGFPGMQGPNGFPGQKGQRGIKGIRGPVNGNVAG
DGFLFTYHSQKATPNPCCPRGTKQLYTGYSLLFINGNNRGHGQDLGTMGSCLMRFSSMPF
LFCNTDNTCRYASRNDYSYWLSTDHPMPSDMALISGTALENYVSRCVVCEAKTNIIAVHS
QTSEVPDCPYGWIDLWQGYSFVMQLGAGAEGSGQPLASPGSCLEHFHRIPFIECHGRGTC
NYYTDSYSYWLASLDPSRMFSKPSPQTVKDTPGNLIGRCRVCMKN
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgaattctgaactcctttgccccattgagggtctcgctgctcgggatcttagtt
tttggattcctggaacaagcaagctctgaaggaggttgtgtttgctctgggaaatctcta
tgccactgtgatggagtcaaaggcagtaagggtgaggcggggtatcctggctttcaagga
cttcctggagtaatgggttacccaggaaatgaaggctcttcaggacccagaggccctaag
ggcgaaatgggtttccctggattccctggacccaaaggatcacggggtctgtcgggaaag
ccaggattctcaggaccgccaggacaaccaggtatccccgggaatgaggggccgatgggg
cagcaaggtatcccaggatgcaatggcaccaagggtgacaggggattcccaggaccgccc
ggacttcctggaagagacggattccaaggtcagccgggactgccaggactgaagggtgaa
acatattatactgaatacgcacaagaagtgaaaggacgacgaggctttcctggagtagat
ggagaaccaggcacaccggggccaggaggaccaccagggcccccaggaccaatggggccc
ctgggacgccccgggacacctggttttcaagggctacctggagagaagggtctggagggc
cgtagcactgggacacctggacggaaaggtgaaaagggtagtcatggaccacctggtacg
cctggtgtgaaaggtgtgaagctctatgcttcagggcctaaagaactaaagggagaacca
ggagatgttgggccaaatggttacccaggacagcaggggttcaccggagcccccggatat
cagggcattaaaggagaccaaggagaacctggcggtccggggaaacctgggaaggaaggc
acgccaggagcctatggcttacagggggagggaggtatgacgggtcccccaggccctcca
gggattgacgggcccccgggggaaaaaggtgatcttggtcccactggtcctccaggagat
gtggtccatatcaccaacgggatcaaaggaagtcaaggggtgcctggatcccctggtccg
tcaggtccaaccggaacagcaggtccacctgggtttcccgggatgaaaggcgaaccagcg
gaaaacatcattgggcctgacggtaagcctggggcccctggcattcctggtcggaaagga
gagaagggggatcctggcccctcatatccaggccctcctggcccagacggacccccagga
gatccagggacaaagggtttccctggaccaaaaggaaaagcagatatgacattgggtaaa
ggagagcgaggacctccaggaagaaagggcatgcagggcccatcaggacccaaaggtggc
atgggatttccgggtgacaagggagagttatgctatgtttgcgttgatcgtggaccaact
tttggacccaagggtccgaagggagctcctggtccacctgggcaatcaggaaggccagga
ttcacaggactaaaaggcgatcagggtgtgatcggattgcctggttcccctgggtcacag
ggctcaactggaaaccctggtgtgaagggtgctgcagggcctagtggggaaactgttatc
ggggtgccaccacatgagaagggtgaccctggagatcgtggagcgtttggtccccctggt
ccagaaggaatagatggagcctcaggcctcccgggtccgagtggtttgccaggggacaaa
ggagagccgagcaaaggggagaaggggggtcgtggccccccaggatcacctgggcttcca
ggccgcccggggcccgttggctcccagggtgcccttggggtggggccccctggccctcag
ggacccaaggggaacactggagtgctgggtctgccaggtgcacctggagatgcaggcgca
aaaggggagccaggagccacatttaccacaccaggggatgttggtcctcccgggcctaaa
ggccaacctggtcaaccagggaccccaggaagtcctggcagtcctggtcttccaggtttc
cctggtctatttggcgtcaaaggacaaaagggttactctatacaaggccctccaggaaat
attggacccaaaggtgaggaaggtgagatagggcccgcaggcccggcagggtatggtagt
cctggacgcccaggaccctccggacctcctgggatgccagggaaagagggcgagcgaggc
tttggccccatggggctgaaaggccgtccgggagcccaaggggatgacgggcctcctggg
cctgtgggtgactcagggccccctggctacccaggccataaaggagaccccggaagaaat
ggtagcccaggagaaatggggtctcctggaggaagtggacctgagggtccaaaaggtttt
cctgggaactgtacggctggaggcgcaggagctccgggagagactggccccagaggtcct
cagggtcccccaggtccaacaggagaacgaggtaatccagggtatcctggtcccccaggc
aaaggtttcccagggaaccagggccagtttggaatcccagggtttcctggaatacctggt
cccaaaggtgcaactggactaaagggcttcaggggtgaagatggcaaacaaggaagacca
ggcagtcggggaaaccaaggaagtccaggcccagttgggccaccaggaccaagtggcaac
cctggacaagatgggccacctggacctcgaggccagcctggtatcgatggcgcaattgga
accccaggtctccgaggtcaacctggagacaggggggctctaggactcaaaggggaggac
cggactgtgcctatgccaggggacaacggagatccagggccaacaggtcctcctggtcct
actggagacagaggtgcgccgggcgctgtgggattcgatggaatcaatggcaaaaacggg
ttaccaggaagcactggcccaccaggtcccatcggtgatcctggtgcagatggtttgccg
ggatctcctggtgtaaatggggatagtgggtctccaggactgattggctttccaggtatg
aatggacagaaaggtgaaaaaggctcctcaggctcagagggaccagcaggagttccagga
cagaaggggatcaaaggccccaaaggaagcacaagcccacctggaccaggttccaagggc
cagaaaggagaaaggggggattcggggtaccctggcgggagggggctgagaggccccaag
ggctcttcagggggatccggtcgtcctggcttcaaggggttgtctggagagaaaggtgtt
actgggctaccaggactgccaggtcctccaggacggggcggagagaagggcagcgatggc
cctccaggttctcgcggccttccgggaccaggtggcctcccagggacggacggccggcca
ggggacccaggtcctccgggggtcagagggaaccaaggcagggatgggattccagggcca
gcaggagagaagggcgatataggggcggctgaatatggcccctcaggaccagagggacca
aaggggataacaggtatggtgggagatgtgggttttccaggcccctacggtccccttggg
ccatggggtgaagtaggagacacaggactcccaggactcgtaggccccagggggccaacc
ggccctccaggccttgaagggcgctgtgtggatgggcccaaaggagacaggggcccctgt
ggaccacatggacctccaggacccaagggctcacagggtccccaggggcccacaggacct
ggccccaaaggagacaatggggagaagggcttcccaggaccgccaggttataccgggtac
aaaggagacaccggacagccaggcataccaggatcgccaggacgcccagggtttaatggc
gataaaggggccatggggagagaaggtgatcagggacccgctggtcagaaaggagtcgct
gggccttcaggacaacaaggatgtgctgggaaaaaaggagaccctggaactaaaggtgtt
cgaggaccagatgtgttcaatgaagtgatactgttgccaggagacccaggtcgacctgga
cccccaggattaaagggcgaagcaggaagaccgggagaaccgggaccagatggacggcca
ggaccgtgcagtacaaaaggctcccaaggtagaccaggattccagggcctgcctggatat
ccagggccaaaaggagacaaaggatttccaggcatgcaaggtcctaatggcttcccaggt
cagaagggtcagaggggcattaaggggattcgtggcccggtgaacggcaatgtagctggc
gatggcttcctgttcacctaccacagtcagaaggccacgccaaacccctgctgccctcgc
ggcaccaagcagctctacactggctactcgctgctcttcatcaatggcaacaacagaggg
catggacaagatctaggtaccatgggcagctgtctgatgcgcttctccagcatgcctttc
cttttctgcaatacggacaacacgtgtcgctacgcctctcgaaacgactactcctactgg
ctctccactgaccatccaatgcctagtgacatggccctaatctctggcactgcactggag
aactacgtaagcaggtgtgttgtgtgtgaagccaagacaaacatcatcgctgtgcacagc
cagacgagtgaggtcccagactgcccttatggttggatcgacctgtggcagggatactct
tttgtcatgcaactgggcgctggagcggaggggtcagggcagcccctggcgtcccctggc
tcttgcctggagcacttccacaggatccccttcatcgagtgccacggccgcggcacctgc
aactactacaccgactcctacagctactggctggcatctcttgaccccagccgcatgttc
agtaaaccatctccgcagacagtgaaggacacccctggcaaccttatcggccgctgtcga
gtctgcatgaagaactag
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