Sardina pilchardus (sardine): 134099832
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Entry
134099832 CDS
T10667
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04382
Cornified envelope formation
spil04510
Focal adhesion
spil04512
ECM-receptor interaction
spil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134099832 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134099832 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134099832 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134099832 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spil04147
]
134099832 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
spil00536
]
134099832 (col4a4)
Exosome [BR:
spil04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134099832 (col4a4)
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134099832 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134099832
NCBI-ProteinID:
XP_062408832
LinkDB
All DBs
Position
13:15122381..15184318
Genome browser
AA seq
1671 aa
AA seq
DB search
MTRPLKITWLSLPIWFLLAMYTNGQKLGVRTQGDPSEGCGGRDCTVCQCFPAKGARGSPG
ALGIQGPQGPPGFPGPQGPPGEKGLRGDEGFTGGPGLKGDMGSAGRAGFPGLNGVDGHPG
PGGLPGLPGLDGCNGTRGNYGYSGVPGQDGLPGPAGYPGVKGEKGEISFRVNYLPGIPGD
IGLAGLHGRSGLPGSVGAPGPIGPIGPDGIDGVPGRPGERGQSGDNGRSLPGHKGDEGDV
GIQGPPGPFEVVDLPEEFYGKGEKGDPGPRGNIGYDGVVGRQGFPGEKGEKGVRGYPGER
GPLGPSGLQGYPGSMGSDGDGGLPGLIGQPGPKGYTGDIGSKGQTFYNQVDYRGMMGDPG
YLGPPGPPGDPGVMGMHGPPGPRGIPIPGPAGEPGLAGQAGLPGEKGDRGRAPDYVVPGE
PGKKGLPGGRGQPGPPGPDGRYCVPGDPGVDGDKGDRGAPGNRGDKGITGVYGDCACGPG
FVVTGPPGDKGSQGPSGVPGDSGESGLSGDPGFSGRPGGIGPVGYPGFQGLKGDKGQKGV
TILLPNGNGTKGERGPSGPPGRRGLTGRPGIRGNEGQPGQPGPPGDSYLPDRGDPGYPGY
YGIKGLRGPVGPPGASVPGASGQRGPPGDEGPLGPGGLPGPKGNPGDTFPCPPMSIGPPG
DKGQRGSPGPPGLPGPSGITGPPGYNGPKGERGELGQPGARGSLGPPGFSGDPGRRGPEG
PSIDGPPGIPGSPGSPGLKGPNGPSTPGHPGSVGDNGRPGFPGTPGPRGPTGQPGTPGFP
GNNGVPGPRGPAGSDGCKGREGPKGDTPLFCPNGPPGPPGPSGCKGYDGANGLKGEKGLN
GEQGSPGQGQPGPPGKPGNPGTPGFPGSRGEMGPNGEDGLPGAVGPKGPQGLTGWAGLPG
DTGPNGANGLLGRKGERGSDGRQGFPGGNGVPAEKGDRGATGPPGESTFIPIKGWPGYPG
RPGGPGFTGPRGDKGLPGKPGLLGYPGQEGFTGPSGPQGRRGKNGAPGAPGLQGPRGFLG
NKGEQGREGAQGDPGGEGCAGRPGRDGDPGQKGDPGDTITYPGPRGDKGDVGYSPPPGPP
GEPGEVGDPGCVGGNGTKGEPGARGCTGVPGFPGVSGPSGVTGKPGSEGPMGEVGLPGLD
GRPGLKGLKGPPGPLGLHGLDGLKGVKGEVGARGPGLEGPRGPPGANGDKGQRGNPGPCG
PRLQGPAGPKGQDGSTGPPGPVGAPGPKGEDCKELRTGQFGEPGVPGSDGPPGPRGDMGA
QGTAMPMRGSVGPPGDPGAPGLRGPRGNAGPPGVPGISGIPGRKGELGQTGFMGSPGPRG
FDGDAGYNGLKGPKGELGETGPKGDAGGHMGGPSPRPPPGPPGPPGSYGPSGAPGFPGPN
GREGGRGHKGDAGDPGYPGIPGSPGAKGPSGNQGVFGDIGIPGQQGPTGDTGDRGDPGQG
TKYNSGFLLVIHSQSESIPVCPADLNQLWTGYSLLYLEGQEKAHTQDLGQAGSCMRMFST
MPFSYCNMASCNHASRNDKSYWLSTNAPVSMLPVEGQDIRSLISRCVVCEAPSLPIALHS
QDSSLPSCPFKWRALWEGYSFLMHTGAGDEGGGQSLTSSGSCLQDFRTHPFVECQGPRGS
CRYYTNIYSFWLTRVSASEADFGHSPDQARLESAREHRGMTSRCLVCMREE
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccttaagatcacctggctaagccttccgatatggttcctattggcgatg
tatacaaatggacaaaaactaggggtgcgtacacagggggacccatcagaaggctgtggt
ggtagagactgcaccgtgtgccagtgcttcccagctaaaggagcgcggggttctcctggt
gctctggggattcagggtcctcagggcccccctggatttccaggtccccaaggcccccca
ggtgagaagggtctccgtggcgatgagggcttcactggtggtcctggcctgaaaggagat
atgggcagtgcaggccgagctggattccctggcttgaatggcgtggacggtcacccaggg
ccaggtggccttcctggcctgccaggattggatggctgtaacggaacccgtggcaactat
ggatactctggcgtcccaggacaagatggcttaccagggccagcaggttatccaggagtt
aaaggagagaagggcgagatctcgttcagagtcaattaccttcctggtatcccaggagac
atcggtctggccggactacatggtcgttccggccttcccggatctgtgggggcaccgggt
ccaatagggccaataggtccggatggaatcgatggagttcctggtcggcctggcgagcgg
ggtcagtctggtgataatggaagatctttacctggacataaaggagatgagggtgatgtc
gggatccagggccctccaggtccctttgaagttgtggaccttccagaggaattttatggc
aaaggagagaagggagatccaggaccaagaggaaacattgggtatgatggtgtagtgggt
cggcaaggatttccgggagaaaaaggggagaaaggtgtccgtggctaccccggagaaaga
ggtcctctaggtccttcaggcctacagggttatcctggatcaatgggctctgacggggat
ggtggtctacctggactcattggtcaacctggacccaagggctacacaggcgacattggg
tcgaagggtcagactttttacaatcaagttgactacagaggaatgatgggagatcctggg
tatcttgggccccctgggccaccaggggaccctggggtgatggggatgcacggaccccca
ggaccgcgtgggattcccatcccaggtcctgctggagagccaggtctagcggggcaagca
ggactccctggagagaagggtgatcgaggtcgtgcaccagactatgttgtgcctggagaa
ccagggaaaaaagggctgcctgggggtagaggccaaccaggaccccccggccctgatgga
aggtactgtgtccctggggatcctggtgtggatggagacaagggagatagaggtgcacca
ggcaacagaggagacaaaggaatcacaggtgtttacggtgactgtgcatgtggacccggt
tttgtggttactggaccccccggagataaaggttctcaagggccgagtggagttccgggt
gactcaggagagtccggactcagtggcgatcccggattctcagggcgtccgggtgggatc
ggtccagttggctatcctggatttcaaggtctgaaaggagataagggtcagaaaggtgta
acaatcttactcccaaacggcaacggtacaaaaggtgagcgtgggccaagtgggcctccg
ggtcggcgtggattaacaggtagacctggaatcagaggcaatgagggacagcctggacaa
ccggggcctccgggagactcttacctccctgaccgaggggatccagggtatcctggatac
tatggcattaagggcctcaggggcccagttggccctccaggggcaagtgtgcccggcgct
tcggggcaacggggcccccctggggatgagggccctctaggaccaggcggactgccgggg
ccaaaaggaaatccaggtgataccttcccatgccctccaatgagcataggcccacctggg
gacaaaggacaacgtggttcaccaggccccccagggcttccaggccctagtggcatcacg
ggacctccagggtacaacggccccaaaggagagaggggagaactaggacaaccaggagca
cgaggaagcctgggtcctcccgggtttagtggagacccaggccgacggggtccagagggg
cccagcatcgatggccccccaggaatacccggcagcccaggctccccgggactcaagggg
cccaacggcccctccactcctgggcacccgggttcagtcggggacaacggacgcccgggc
tttcctggaaccccgggcccccgtggaccaacaggccaaccgggcacaccgggttttcct
ggaaacaatggagtaccaggaccgagaggaccggcagggagtgacggctgcaaaggcaga
gaggggcctaaaggagacacccctctcttctgtccgaacggtccacctggcccacctggt
ccttcaggctgcaagggctacgacggggcaaacggtctgaaaggggagaaaggtttgaac
ggggagcaaggctctcctggccagggacagcctgggcctccagggaagcccggaaatcca
ggaacgccgggcttcccaggttcccggggggaaatggggccaaacggggaagatggactg
cctggagctgtcggaccgaaaggtccacaaggtctgaccggttgggcagggttgccaggg
gatactggaccaaatggcgctaatgggcttctagggaggaagggagagcggggttccgac
ggacggcaaggattcccaggaggcaatggagtaccagcagagaaaggtgacagaggcgca
actggtcccccgggagaatcaactttcatccccatcaaaggctggcctggataccctgga
cgtccaggtggtcctggattcacaggacctcgaggtgacaagggcttgcccggcaaaccg
ggcctcctgggctatcccggccaagaggggttcactggccccagcggccctcagggacgg
agggggaagaacggagcaccaggagcaccaggcctgcaggggccacgcgggtttctgggc
aacaaaggggagcaaggaagagaaggggcccagggagaccctggaggcgagggctgtgca
ggacgaccaggccgtgatggagacccagggcaaaaaggtgatccgggtgatactattact
tatccaggacctcgaggggacaaaggcgacgtaggttacagcccaccaccaggaccccca
ggtgagccaggtgaggtgggtgacccaggttgcgtcggcggcaatggaactaaaggagag
ccaggagcccgcggatgtacaggtgtaccaggatttccaggtgtatcaggtccttcgggc
gtgacaggtaaacctggctcagaggggcccatgggcgaggttggactgcctgggcttgat
ggcagacctggactcaaaggactcaaaggtcctcccgggccattgggactgcatggcctg
gatggtctgaagggggtgaagggtgaggtcggagcacgagggcctgggcttgaaggcccc
cgcggtcctccaggtgccaatggggacaaaggacagagaggaaatccaggcccctgtggg
ccccgattacagggccctgcaggccccaaaggccaggatggatccaccggacctccgggt
cctgtcggagcacctggtccaaaaggcgaggactgtaaggaactcagaacaggacagttc
ggagaacccggtgtcccgggatcagatggaccaccagggccacgaggtgacatgggtgct
caagggacagcgatgcctatgcgaggaagtgtcggacccccaggagacccaggtgcccct
gggctgcgaggaccgagaggcaatgctggacctccaggagtgccaggcatatcaggcatc
ccaggacgaaaaggcgaactaggacaaaccggcttcatgggctccccaggacccagaggc
tttgatggggatgctggatataatggactcaaaggcccgaaaggggagctaggagagaca
ggtcctaagggggacgcagggggccacatgggaggtccgagtccccgtcctccccccggg
cctccggggcctcctggttcatatgggccctcaggtgccccagggttccccggccctaac
ggcagagaaggtggcagaggccataagggtgatgcaggagacccaggatatccaggaatc
cctggatcaccaggagctaaagggccctcaggaaaccagggagtgtttggagacatagga
ataccaggacaacagggtcccacaggagacaccggtgatcgcggagatccgggacaaggc
accaagtacaactctggtttcctattggtcatccacagccaatcagaatccatccctgtg
tgccctgctgacctgaaccagctgtggactggatacagcctcctctatttggagggacag
gagaaagcccacacacaggaccttggccaggccggctcctgcatgcgcatgttcagcacc
atgcccttctcctactgcaacatggcctcctgcaaccacgccagccgcaacgacaagtcc
tactggctctccaccaacgcgccggtgtccatgctgcccgtggagggccaggacatccgc
tcgctgatcagccgctgcgtggtgtgtgaggccccctccctgcccatcgccctccacagc
caggacagcagcctgccctcctgtccattcaagtggagagctctatgggagggatactcc
ttcttgatgcacacgggcgcgggcgatgagggcggcggccagtcgctgacgtcgtcgggc
agttgcctgcaggacttccggacgcacccgttcgtggagtgccagggcccgcgcggctcc
tgccgctactacaccaacatctacagcttctggctgacccgcgtcagcgcgagcgaagcc
gacttcggccacagccccgaccaggctcgactggagagtgcgagagagcaccggggaatg
acgagccgctgcctggtctgtatgagggaggagtga
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integrated database retrieval system
