Sardina pilchardus (sardine): 134099832
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Entry
134099832 CDS
T10667
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04510
Focal adhesion
spil04512
ECM-receptor interaction
spil04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
spil04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134099832 (col4a4)
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134099832 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134099832
NCBI-ProteinID:
XP_062408832
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Position
13:15122381..15184318
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AA seq
1671 aa
AA seq
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MTRPLKITWLSLPIWFLLAMYTNGQKLGVRTQGDPSEGCGGRDCTVCQCFPAKGARGSPG
ALGIQGPQGPPGFPGPQGPPGEKGLRGDEGFTGGPGLKGDMGSAGRAGFPGLNGVDGHPG
PGGLPGLPGLDGCNGTRGNYGYSGVPGQDGLPGPAGYPGVKGEKGEISFRVNYLPGIPGD
IGLAGLHGRSGLPGSVGAPGPIGPIGPDGIDGVPGRPGERGQSGDNGRSLPGHKGDEGDV
GIQGPPGPFEVVDLPEEFYGKGEKGDPGPRGNIGYDGVVGRQGFPGEKGEKGVRGYPGER
GPLGPSGLQGYPGSMGSDGDGGLPGLIGQPGPKGYTGDIGSKGQTFYNQVDYRGMMGDPG
YLGPPGPPGDPGVMGMHGPPGPRGIPIPGPAGEPGLAGQAGLPGEKGDRGRAPDYVVPGE
PGKKGLPGGRGQPGPPGPDGRYCVPGDPGVDGDKGDRGAPGNRGDKGITGVYGDCACGPG
FVVTGPPGDKGSQGPSGVPGDSGESGLSGDPGFSGRPGGIGPVGYPGFQGLKGDKGQKGV
TILLPNGNGTKGERGPSGPPGRRGLTGRPGIRGNEGQPGQPGPPGDSYLPDRGDPGYPGY
YGIKGLRGPVGPPGASVPGASGQRGPPGDEGPLGPGGLPGPKGNPGDTFPCPPMSIGPPG
DKGQRGSPGPPGLPGPSGITGPPGYNGPKGERGELGQPGARGSLGPPGFSGDPGRRGPEG
PSIDGPPGIPGSPGSPGLKGPNGPSTPGHPGSVGDNGRPGFPGTPGPRGPTGQPGTPGFP
GNNGVPGPRGPAGSDGCKGREGPKGDTPLFCPNGPPGPPGPSGCKGYDGANGLKGEKGLN
GEQGSPGQGQPGPPGKPGNPGTPGFPGSRGEMGPNGEDGLPGAVGPKGPQGLTGWAGLPG
DTGPNGANGLLGRKGERGSDGRQGFPGGNGVPAEKGDRGATGPPGESTFIPIKGWPGYPG
RPGGPGFTGPRGDKGLPGKPGLLGYPGQEGFTGPSGPQGRRGKNGAPGAPGLQGPRGFLG
NKGEQGREGAQGDPGGEGCAGRPGRDGDPGQKGDPGDTITYPGPRGDKGDVGYSPPPGPP
GEPGEVGDPGCVGGNGTKGEPGARGCTGVPGFPGVSGPSGVTGKPGSEGPMGEVGLPGLD
GRPGLKGLKGPPGPLGLHGLDGLKGVKGEVGARGPGLEGPRGPPGANGDKGQRGNPGPCG
PRLQGPAGPKGQDGSTGPPGPVGAPGPKGEDCKELRTGQFGEPGVPGSDGPPGPRGDMGA
QGTAMPMRGSVGPPGDPGAPGLRGPRGNAGPPGVPGISGIPGRKGELGQTGFMGSPGPRG
FDGDAGYNGLKGPKGELGETGPKGDAGGHMGGPSPRPPPGPPGPPGSYGPSGAPGFPGPN
GREGGRGHKGDAGDPGYPGIPGSPGAKGPSGNQGVFGDIGIPGQQGPTGDTGDRGDPGQG
TKYNSGFLLVIHSQSESIPVCPADLNQLWTGYSLLYLEGQEKAHTQDLGQAGSCMRMFST
MPFSYCNMASCNHASRNDKSYWLSTNAPVSMLPVEGQDIRSLISRCVVCEAPSLPIALHS
QDSSLPSCPFKWRALWEGYSFLMHTGAGDEGGGQSLTSSGSCLQDFRTHPFVECQGPRGS
CRYYTNIYSFWLTRVSASEADFGHSPDQARLESAREHRGMTSRCLVCMREE
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccttaagatcacctggctaagccttccgatatggttcctattggcgatg
tatacaaatggacaaaaactaggggtgcgtacacagggggacccatcagaaggctgtggt
ggtagagactgcaccgtgtgccagtgcttcccagctaaaggagcgcggggttctcctggt
gctctggggattcagggtcctcagggcccccctggatttccaggtccccaaggcccccca
ggtgagaagggtctccgtggcgatgagggcttcactggtggtcctggcctgaaaggagat
atgggcagtgcaggccgagctggattccctggcttgaatggcgtggacggtcacccaggg
ccaggtggccttcctggcctgccaggattggatggctgtaacggaacccgtggcaactat
ggatactctggcgtcccaggacaagatggcttaccagggccagcaggttatccaggagtt
aaaggagagaagggcgagatctcgttcagagtcaattaccttcctggtatcccaggagac
atcggtctggccggactacatggtcgttccggccttcccggatctgtgggggcaccgggt
ccaatagggccaataggtccggatggaatcgatggagttcctggtcggcctggcgagcgg
ggtcagtctggtgataatggaagatctttacctggacataaaggagatgagggtgatgtc
gggatccagggccctccaggtccctttgaagttgtggaccttccagaggaattttatggc
aaaggagagaagggagatccaggaccaagaggaaacattgggtatgatggtgtagtgggt
cggcaaggatttccgggagaaaaaggggagaaaggtgtccgtggctaccccggagaaaga
ggtcctctaggtccttcaggcctacagggttatcctggatcaatgggctctgacggggat
ggtggtctacctggactcattggtcaacctggacccaagggctacacaggcgacattggg
tcgaagggtcagactttttacaatcaagttgactacagaggaatgatgggagatcctggg
tatcttgggccccctgggccaccaggggaccctggggtgatggggatgcacggaccccca
ggaccgcgtgggattcccatcccaggtcctgctggagagccaggtctagcggggcaagca
ggactccctggagagaagggtgatcgaggtcgtgcaccagactatgttgtgcctggagaa
ccagggaaaaaagggctgcctgggggtagaggccaaccaggaccccccggccctgatgga
aggtactgtgtccctggggatcctggtgtggatggagacaagggagatagaggtgcacca
ggcaacagaggagacaaaggaatcacaggtgtttacggtgactgtgcatgtggacccggt
tttgtggttactggaccccccggagataaaggttctcaagggccgagtggagttccgggt
gactcaggagagtccggactcagtggcgatcccggattctcagggcgtccgggtgggatc
ggtccagttggctatcctggatttcaaggtctgaaaggagataagggtcagaaaggtgta
acaatcttactcccaaacggcaacggtacaaaaggtgagcgtgggccaagtgggcctccg
ggtcggcgtggattaacaggtagacctggaatcagaggcaatgagggacagcctggacaa
ccggggcctccgggagactcttacctccctgaccgaggggatccagggtatcctggatac
tatggcattaagggcctcaggggcccagttggccctccaggggcaagtgtgcccggcgct
tcggggcaacggggcccccctggggatgagggccctctaggaccaggcggactgccgggg
ccaaaaggaaatccaggtgataccttcccatgccctccaatgagcataggcccacctggg
gacaaaggacaacgtggttcaccaggccccccagggcttccaggccctagtggcatcacg
ggacctccagggtacaacggccccaaaggagagaggggagaactaggacaaccaggagca
cgaggaagcctgggtcctcccgggtttagtggagacccaggccgacggggtccagagggg
cccagcatcgatggccccccaggaatacccggcagcccaggctccccgggactcaagggg
cccaacggcccctccactcctgggcacccgggttcagtcggggacaacggacgcccgggc
tttcctggaaccccgggcccccgtggaccaacaggccaaccgggcacaccgggttttcct
ggaaacaatggagtaccaggaccgagaggaccggcagggagtgacggctgcaaaggcaga
gaggggcctaaaggagacacccctctcttctgtccgaacggtccacctggcccacctggt
ccttcaggctgcaagggctacgacggggcaaacggtctgaaaggggagaaaggtttgaac
ggggagcaaggctctcctggccagggacagcctgggcctccagggaagcccggaaatcca
ggaacgccgggcttcccaggttcccggggggaaatggggccaaacggggaagatggactg
cctggagctgtcggaccgaaaggtccacaaggtctgaccggttgggcagggttgccaggg
gatactggaccaaatggcgctaatgggcttctagggaggaagggagagcggggttccgac
ggacggcaaggattcccaggaggcaatggagtaccagcagagaaaggtgacagaggcgca
actggtcccccgggagaatcaactttcatccccatcaaaggctggcctggataccctgga
cgtccaggtggtcctggattcacaggacctcgaggtgacaagggcttgcccggcaaaccg
ggcctcctgggctatcccggccaagaggggttcactggccccagcggccctcagggacgg
agggggaagaacggagcaccaggagcaccaggcctgcaggggccacgcgggtttctgggc
aacaaaggggagcaaggaagagaaggggcccagggagaccctggaggcgagggctgtgca
ggacgaccaggccgtgatggagacccagggcaaaaaggtgatccgggtgatactattact
tatccaggacctcgaggggacaaaggcgacgtaggttacagcccaccaccaggaccccca
ggtgagccaggtgaggtgggtgacccaggttgcgtcggcggcaatggaactaaaggagag
ccaggagcccgcggatgtacaggtgtaccaggatttccaggtgtatcaggtccttcgggc
gtgacaggtaaacctggctcagaggggcccatgggcgaggttggactgcctgggcttgat
ggcagacctggactcaaaggactcaaaggtcctcccgggccattgggactgcatggcctg
gatggtctgaagggggtgaagggtgaggtcggagcacgagggcctgggcttgaaggcccc
cgcggtcctccaggtgccaatggggacaaaggacagagaggaaatccaggcccctgtggg
ccccgattacagggccctgcaggccccaaaggccaggatggatccaccggacctccgggt
cctgtcggagcacctggtccaaaaggcgaggactgtaaggaactcagaacaggacagttc
ggagaacccggtgtcccgggatcagatggaccaccagggccacgaggtgacatgggtgct
caagggacagcgatgcctatgcgaggaagtgtcggacccccaggagacccaggtgcccct
gggctgcgaggaccgagaggcaatgctggacctccaggagtgccaggcatatcaggcatc
ccaggacgaaaaggcgaactaggacaaaccggcttcatgggctccccaggacccagaggc
tttgatggggatgctggatataatggactcaaaggcccgaaaggggagctaggagagaca
ggtcctaagggggacgcagggggccacatgggaggtccgagtccccgtcctccccccggg
cctccggggcctcctggttcatatgggccctcaggtgccccagggttccccggccctaac
ggcagagaaggtggcagaggccataagggtgatgcaggagacccaggatatccaggaatc
cctggatcaccaggagctaaagggccctcaggaaaccagggagtgtttggagacatagga
ataccaggacaacagggtcccacaggagacaccggtgatcgcggagatccgggacaaggc
accaagtacaactctggtttcctattggtcatccacagccaatcagaatccatccctgtg
tgccctgctgacctgaaccagctgtggactggatacagcctcctctatttggagggacag
gagaaagcccacacacaggaccttggccaggccggctcctgcatgcgcatgttcagcacc
atgcccttctcctactgcaacatggcctcctgcaaccacgccagccgcaacgacaagtcc
tactggctctccaccaacgcgccggtgtccatgctgcccgtggagggccaggacatccgc
tcgctgatcagccgctgcgtggtgtgtgaggccccctccctgcccatcgccctccacagc
caggacagcagcctgccctcctgtccattcaagtggagagctctatgggagggatactcc
ttcttgatgcacacgggcgcgggcgatgagggcggcggccagtcgctgacgtcgtcgggc
agttgcctgcaggacttccggacgcacccgttcgtggagtgccagggcccgcgcggctcc
tgccgctactacaccaacatctacagcttctggctgacccgcgtcagcgcgagcgaagcc
gacttcggccacagccccgaccaggctcgactggagagtgcgagagagcaccggggaatg
acgagccgctgcctggtctgtatgagggaggagtga
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