Sardina pilchardus (sardine): 134099866
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Entry
134099866 CDS
T10667
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134099866 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134099866 (scarf1)
Membrane trafficking [BR:
spil04131
]
Endocytosis
Phagocytosis
Scavenger receptors
134099866 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_C8A_B_C6
Motif
Other DBs
NCBI-GeneID:
134099866
NCBI-ProteinID:
XP_062408874
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All DBs
Position
13:8999724..9007379
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AA seq
930 aa
AA seq
DB search
MDVRLIGLGLLVLGCLGSGAAQKLSRSGRNVCLDHRDPSSLVCCDGWRQQGDECTIPLCV
GEGACQQDEVCVYPGMCRCRPGYFGAQCKTSCPPEFWASDCREHCLCHPNGRCHPATGEC
TCLPTRWGPLCQHECMCGRHGHCDPLHGNCTCDEGWWTSTCAKMCHCFEQGTTTCVQATG
QCVCKHGYYGQKCSLRCNCYLSPCEQNTGHCQCVRGWWGPGCDRHCNCDLSHGECQPSNG
ECVCEPGYKSPVCHEPCSPGHYGSGCLTRCGHCVKGAACSAVDGSCEACDPGWNGTRCDQ
LCPVGYYGDHCHKACPTCKNQEACDPVTGECSHCNPGWIGPRCDRLCPAGTFGDGCRSQC
SPCYYGRCDPVAGNCICQPGFQGDSCNSTCPDHLYGVNCSSVCDCGEVDCHRVSGACLYS
SHAGLIVGLLILVLLVLLVLLCCCCCCCLGKVPTDGKERVAVGDGGPALRMKHHVYSVLA
TVSSSIPCTSLWTSGLPRVTVSHHDPELTFNHSFIEPPSSGWLTDNSFESDEGEEGEALY
CVPPREDISTVAGGEFQELSSKCNMFPDPSAFSSEDMALAFGIPRTSSIAKSKRPSVSFA
EGTKFSPKERRGSGQELPAVARKPKTPWGVLMVSALQSREEGGTDRGDQEPETGESLVDE
PRTAEDPDDPEAGRYATAPSRSTLAVPGSSRRRTLSNPTKKNSQAPALTGSHQSEDAVDK
VTTVYVTVGKALRGSKAETSSEGPVQAMLRRLGSIQRQREEGSKPKARGEAIVKPPRRKL
GARAAVWEQVVSTGGGGSPPGAVPMRKPSRRKHTTLSSPCPMSSNESAQEGAAPKRPLSS
ILKSVPEWVASASARREVQPAEPRACCPDPPGEDGYLTVGPAQIATNLGEVITNEVIMAC
DDDDDGPKYENVMHYESKHSSTNYENIHNI
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggacgtccgtctgattggtcttgggcttctggtcttgggctgcctcggctccggcgcg
gcgcagaaactctcgcggagtggacggaacgtgtgtctggaccacagggatccatcctct
ctggtttgctgtgatggctggcgtcagcagggagacgagtgcactatccctctgtgcgtg
ggagagggggcttgccagcaggatgaggtgtgtgtctatccaggaatgtgtcgctgcagg
cctggctactttggcgctcagtgcaaaacctcctgtcctcctgagttctgggcatccgac
tgccgtgagcactgcctgtgccacccgaatgggcgctgccacccggctacgggcgagtgc
acctgcctgcccacccgctggggcccgctatgccagcacgagtgcatgtgtggccgccac
ggccactgcgacccgctgcacggcaactgcacctgcgacgagggctggtggacgtctacc
tgtgccaagatgtgccactgcttcgagcagggcacgacgacgtgcgtccaggcgacgggc
cagtgcgtgtgcaagcacggctactacggccagaagtgcagcctgcgctgcaactgctac
ctgtcgccctgcgagcagaacacgggccactgccagtgcgtgagaggctggtgggggccg
ggctgcgaccgacactgcaactgtgacctcagccacggggagtgccagcccagcaacggg
gagtgcgtgtgcgagcccggttacaagagccctgtgtgccacgagccctgcagccctgga
cactacggcagcgggtgcctgacaaggtgtggtcactgtgttaagggcgccgcgtgctct
gcagtggacggctcttgtgaggcctgcgatccgggctggaacggcacgcgctgtgaccag
ctctgtcccgttggatactacggagaccactgtcataaagcatgtccaacttgcaagaac
caagaggcctgcgatccagtgacaggggagtgttctcactgtaaccccgggtggattggc
cccaggtgtgaccgtttgtgtcccgcgggaacgtttggcgacggctgccgctctcagtgc
agcccctgctattatggacgctgtgaccctgtggcaggaaactgcatctgccagcctggt
ttccagggcgacagctgcaacagcacttgtccagatcacctctacggtgtgaactgctca
tctgtgtgtgactgtggtgaagtggactgtcatcgtgtctcaggagcgtgcctctacagc
tcccacgcaggtctcatcgtggggcttctcatccttgtgctgcttgtgctgctcgtgctg
ctctgctgctgctgctgctgctgtttgggaaaagtgcccactgatgggaaagagagggtt
gccgtgggagatggaggtcctgccctgcggatgaaacaccatgtgtacagtgtgttggct
actgtgagctcatccatcccttgcaccagcttgtggacgtcagggttgcccagagttaca
gtgtctcatcacgatcctgagctgacgttcaaccatagcttcattgagccgccctcatct
ggttggttaactgacaactcgtttgagagcgatgagggagaggaaggggaggccttgtac
tgtgttccacctagagaagatatctccacagtagcgggaggggagttccaggagctgagc
tccaagtgcaacatgttccctgacccgtcggccttcagctctgaggacatggctctggcc
ttcggcatcccgcgcacctccagcatcgccaagtccaagcgtccatccgtctccttcgct
gagggcaccaagttcagccccaaggagcgccgtggctcgggacaggagctaccggctgtt
gcccgcaagcccaagactccttggggggtcctcatggtctctgctctccagagccgggaa
gagggcgggacggacaggggggaccaggagccagagacgggcgagagcctcgtggacgag
ccgaggaccgcggaagatccggacgatcccgaggccgggaggtacgccaccgctccctcc
cgcagcaccctcgccgtgcccggaagcagccggcgacgcacactgtccaacccgaccaag
aagaactcccaagcgccggccctgaccggtagccaccagtcggaggatgccgtggacaag
gtgaccactgtgtatgtgactgtgggaaaagctctgcgtgggtccaaggcagagaccagt
tcagaggggccagtacaggccatgctgcgccgactgggcagcatccagaggcagagggaa
gaaggcagcaagcccaaggcccgtggagaggccatcgtcaagcccccgcggaggaagctg
ggagcacgggccgcagtctgggagcaggtggtgagcaccggaggaggggggagcccccct
ggcgctgtgcccatgaggaagcccagtcgccggaagcacacgaccctcagctccccctgt
cccatgagctccaacgagagcgcgcaggagggtgccgccccgaagaggccgctgtcctcc
atcttgaagagcgtcccagagtgggtggcttctgcgtcggcgaggagagaggtccaaccg
gccgagccccgagcttgctgcccagatcctccaggagaggacgggtatctgactgtggga
cctgcacaaattgcaaccaacctgggggaagtcatcaccaatgaagtcattatggcctgt
gatgatgatgatgatggaccaaagtatgaaaatgtcatgcattatgaaagcaagcatagt
agtaccaattatgaaaatatccataatatctga
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