Sardina pilchardus (sardine): 134100204
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Entry
134100204 CDS
T10667
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit b
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04141
Protein processing in endoplasmic reticulum
spil04210
Apoptosis
spil04217
Necroptosis
spil04218
Cellular senescence
spil04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134100204 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
134100204 (capn1b)
04217 Necroptosis
134100204 (capn1b)
04218 Cellular senescence
134100204 (capn1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134100204 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spil01002
]
134100204 (capn1b)
Enzymes [BR:
spil01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
134100204 (capn1b)
Peptidases and inhibitors [BR:
spil01002
]
Cysteine peptidases
Family C2: calpain family
134100204 (capn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
134100204
NCBI-ProteinID:
XP_062409303
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All DBs
Position
1:complement(11784981..11815358)
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AA seq
704 aa
AA seq
DB search
MYPSAGISSRIQHERSRAEGMGSQQQAVLFLGQDFEALRRQCVESGALFEDPCFPAEPHS
LGFKELAPHSSKTRGVEWVRPTELTDNPQFILGGATRTDICQGALGDCWLLAAIASLTLH
EKLLHRVVPHGQSFQDDYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGNEFW
SALVEKAYAKINGSYEALSGGSTTEGFEDFTGGVSEMYELKKAPRDLHRVISKALDRGSL
LGCSIDITSAFDMEAITFKKLVKGHAYSVTGLKQVDYRGRMERLIRIRNPWGQVEWTGAW
SDSSSEWDSIDPSDREDMHCRTEDGEFWMSFDEFKRQFSRLEICNLTPDALSDDGMSFWN
TIKFHGTWRKGSTAGGCRNNPNTFWINPQYKITLLEEDDDPEDDEVACSLLVALMQKDRR
RYRKQGQDMHTIGFALYEIPEEFRGCPSVHMKKDFFLRHSSCARSETFINLREVSNRIRL
PPGEYLIVPSTFEASKEADFVLRVFTEKQSDTQEMDDDVTFNIEEDEEVSEEDIDDSFRT
MFAQLSGEDMEISVRELRTILNRVVSKHRDLKTDGFSMESCRGMVSLMDKDGSARLGIVE
FQILWNKIRKWLGIFRQYDLDKSGAMSSYEMRMAMENAGFMLNNKLTQVLVARYAENETI
DFDNFVCCLVKLEAMYKAFLELDKDGTGVAELNLTEWLYMAMCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtacccgtcggcgggcatctcctcgcgtatccagcacgagcgctcgcgggcggagggc
atggggtctcagcagcaggccgtgctgttcctgggtcaggacttcgaggcgctgcggcgg
cagtgcgtggagagcggggcgctgttcgaggacccctgcttccccgccgagccacactcg
ctcggcttcaaggagctggcgccacactcctccaagaccaggggagtggagtgggtcagg
cccacggagctgacagacaacccgcagttcatcttgggtggggccacacgcacggacatc
tgccaaggggccttgggtgattgctggttgttggctgcgatcgcgtctctgacgctgcat
gagaagctgctgcacagagtggtgcctcatggacagagtttccaggacgactacgccggg
atcttccacttccagttctggcagtttggggagtgggtggacgtcgtcattgacgaccgt
ctgccggtgaaggacggggagctgatgttcgtgcactcagccgagggcaacgagttctgg
agcgcgctcgtggagaaggcctacgccaagatcaacggctcgtatgaggcgctgtcgggc
ggctccaccacggagggctttgaggacttcacggggggcgtgtctgagatgtacgagctg
aagaaggcgccgcgagacctgcaccgcgtcatcagcaaagccctggacagaggatcactg
ctgggatgctctattgacattaccagtgccttcgatatggaggccatcaccttcaagaag
ctggtgaagggacacgcctactcagtcaccggactaaaacaggtggactaccggggccga
atggagcgtctgattcgcatacggaacccctggggtcaggtggagtggaccggcgcctgg
agcgacagctcctctgagtgggactctattgacccttctgaccgagaggacatgcactgc
cgcacagaggacggagagttctggatgtcgtttgatgagttcaagcgtcagttctctcgg
ctggagatctgtaatctgacgccggacgcgctgagcgatgacggcatgagcttctggaac
accatcaagttccacggcacctggaggaaaggcagcacggccggaggatgcaggaacaac
cccaacacgttctggattaaccctcagtacaagatcactctgctggaggaggacgatgac
ccggaggatgacgaggtggcctgcagcctgctggtggcgctcatgcagaaggaccgccgc
cgctacaggaagcagggacaggacatgcacaccatagggttcgccctctacgagattcct
gaagaattccgtgggtgtccgagcgtccacatgaagaaggacttcttcctgcgccactcg
tcgtgcgcgcgctccgagaccttcatcaacctgcgtgaggtcagcaaccgtatccgcctg
ccgcccggcgagtacctgatcgtgccctcgacctttgaagccagcaaggaggccgacttc
gtgctgcgcgtcttcaccgagaagcagtcggacacgcaggaaatggatgatgatgtgacc
ttcaacatcgaggaggacgaggaggtctcggaggaggacattgacgactccttcaggacc
atgttcgctcagctctctggagaggacatggagatctctgtacgggagctcaggaccatc
ctcaacagagtcgtgtctaaacaccgtgacctgaagacggacggcttcagcatggagtcg
tgtcgggggatggtcagtctcatggacaaagacggcagcgcccgcttgggcatcgtggag
ttccagatcctctggaacaagatcaggaagtggctgggaatcttcaggcaatatgacctg
gacaagtctggtgctatgagctcatatgagatgaggatggccatggagaatgcaggcttt
atgctcaacaacaagctgactcaggtgctggtagcccgctacgccgaaaacgagaccatc
gacttcgacaactttgtgtgctgcctggtcaagctggaggccatgtacaaagccttcctg
gagctggacaaggacggcaccggtgtggccgagctcaacctgactgagtggctgtacatg
gccatgtgtggctga
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