Sardina pilchardus (sardine): 134100252
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Entry
134100252 CDS
T10667
Symbol
rabgef1l
Name
(RefSeq) RAB guanine nucleotide exchange factor (GEF) 1, like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
134100252 (rabgef1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134100252 (rabgef1l)
Membrane trafficking [BR:
spil04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
134100252 (rabgef1l)
Protein recycling
Other Rab GTPase associated proteins
134100252 (rabgef1l)
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Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
134100252
NCBI-ProteinID:
XP_062409343
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Position
13:complement(30887896..30907659)
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AA seq
514 aa
AA seq
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MSGQMERRGIHVDQSELLCNKGCGFYGNAAWQGLCSKCWREENQHARQKQIQDDWALAAR
LQKEEEAAYASSHHGPQAPPGPQGPQSHSSSPISSFAKFEDKKTNEKSRKVTTVKKFFSP
SSRTQPKKDSGPPDTPSPSTSRVSGEMDRATHEFIDFLKTLHKPGREIFKQCRAFTETMA
YKRDMSAEDQSECVQDFYQNLSDKLHVHYKGATEKVELVMDEVEKYMMIRLYEDVFCPET
TDDEKKDLAIQKRIRALHWVTIKMLGVPVNEEIPAVSDNVVKAITAIIEVDSKRVPREKL
TCVTTCSKHIFNAIKITKNEAASADDFLPTLIYIVLKANPPRLHSNIQYITRFCNPSRIM
TGEDGYYFTNLCCAVAFIEKLDGQSLNLSQEEFELYMSGGASPQKPLSPRASSGPAPAHH
QSLDLLSGLDTRQEQVLDGARRLERDLIEWCDGVETSVQDVLDKFPLDSGGGGIATATGA
AAPEAPADPATAIDSDNVENDKLPPPLTPQLFAR
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacagatggagcggcgcgggatccacgtagaccagtccgagttgctgtgcaac
aagggatgcggtttctacggaaacgcggcctggcaggggctctgctccaagtgctggcga
gaggagaaccagcacgcgcggcagaaacagatccaggacgactgggccctggcagcacgg
ctgcagaaggaagaggaggctgcctacgccagtagccaccatgggccgcaggccccgccg
ggcccccaagggccacagtcccactcctccagtcccatctcctccttcgcaaagttcgag
gacaagaagaccaacgagaagtcccgcaaggtcaccacggtcaagaagttcttcagtccg
tcatccagaacgcagccaaagaaagactccgggcccccagacactccgtcccccagcacc
agcagggtcagtggggagatggaccgggccacgcacgagttcatcgacttcctcaagacc
ctgcacaagcccggccgcgagatcttcaagcagtgccgcgccttcaccgagaccatggcc
tacaagcgggacatgagtgcagaggatcagtccgagtgtgtccaggacttctaccagaac
ctgtccgataagctgcatgtccactacaaaggagccacagagaaagtagagttagtgatg
gacgaggtggagaagtatatgatgatccggctctacgaagatgtcttctgtcccgagacc
acggacgacgagaaaaaagacctggccatccagaagagaatcagggcgctacactgggtg
actattaagatgctgggcgtccctgtgaatgaggagatccctgctgtgtctgataacgtg
gtgaaagccatcacagccatcatcgaggtggactcaaagcgcgtgccgcgggagaaactg
acgtgcgtgacgacgtgcagcaagcacatcttcaacgccatcaagatcaccaagaacgag
gcggcgtcggccgacgacttcctgcccacgctcatctacatcgtgctgaaggccaacccg
cctcgcctgcactccaacatccagtacatcacgcgcttctgcaaccccagcaggatcatg
accggggaggacggatactacttcaccaacctgtgctgtgcggtggccttcatagagaag
ctggacggccagtcgctgaacctgagccaggaggagttcgagctgtacatgagcggcggg
gcctcgccccagaagcccctcagcccgcgggccagcagcggcccggctccggcgcaccac
cagagcctggacctgctgagcgggctggacacgcggcaggagcaggttctggacggagcg
cggcgcctggagcgggacctgatcgagtggtgcgacggcgtggagaccagcgtccaggac
gtgctcgacaagttcccgctcgacagcggcggcggcggcattgccacggcaacaggggcg
gcggcaccggaggcaccggccgacccggcgaccgccatcgactcggacaacgtggagaac
gacaagctgcccccgccgctcacgccacagctgttcgctagatag
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