Sardina pilchardus (sardine): 134100317
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Entry
134100317 CDS
T10667
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
spil Sardina pilchardus (sardine)
Brite
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134100317 (setx)
5.6.2.5 RNA 5'-3' helicase
134100317 (setx)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134100317 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134100317
NCBI-ProteinID:
XP_062409418
LinkDB
All DBs
Position
14:27114544..27140027
Genome browser
AA seq
2276 aa
AA seq
DB search
MEICLWCTTERENVVEFLEQYAASSLSQDQLQTATEDLNNCADCVSEYHLARSQVPHLHK
RLWVLETKRLLTRFCQMTQDDIEDDLFIVEDNQERPVSKMTMGEFEAALRIPLIEILQYP
YLLAHSKLSDVCLDALCRIESIDIKEKYKGIYLLLVHPNEKVRSWAIATARMLGCVDRDD
FYDVEEVLACMFCVLELGISFPLEDSDPPSACNGKLARMPAHLYDSSNVKNYWLGICMLL
TVLDAQAMDSLFLGPNKQTNILQCILNAMEEEGREFDSTSDPFWPALQCFMVILDRLGPL
SWGYIDPIKAFNIITDSSSYISEIETIRSNTRMNVKEEIEDDDLVTCSQMVYATFLQQKS
SKSHRSHRAEGLDQQVYKEMASLVSLLHTELGKEMHLYNSTFLWFIPFVRSVMNMAELSI
HYIQPVVQYLRDQVRKMVTKSAIWDKVTVFFAYLLVHVVEMLLTEGRMDILQHCSYMWIK
IIVKGAMIDNMMGTGGYEVSVSSSSSMWGSGRSTGGAMSSLSSTLHLACLKVIRLVLKEG
GRLGSDLHPRAFYFLNLLNKHLRDATPRGWSLSVSEQNELQQCLKHLAETFAKKVPMSAS
TAASVSALPTPPAETAAMESPFLGQVDLSFIKKEPVSCSSPVRDMDCTSNVASVKDELAV
DIHHLKPDLGKLQAIRSRLSDNLPKMQAIVQNKPDGADHVSPPSLVSEGKRSPGSPRPST
STCAQTSHLPDEKEDDEPLLVMQQRLIQGENDESEEESNVSIIVISDEDMASVNGVESGD
GMGPLFKIKKEQEHMVESPGRDFDGDLSESQVFEFETQEDVASAWSDTRFDLAGSSKDPV
RVAFETEFVKPKSPPQKVSSKKPKPKPPPPIIEPQPLRKKRTSAAHQVAQAANVEATVDA
PSTSRVHASTPAIVPPKKFRKVPEPTSTVERLGLKKRKRTAFDLSQRSLTSVEELRRYGQ
TVQVEKKVKRLRISKPTSTHKTMGKNQKLLASQEMQFHRLSRNQVQKVTSQTKQTTPLSP
TLQAQTARSCTSEGKKHEGNGSNDSNMQSCDLDQRSNGSGDGTPTGSAVESDDGKDEERQ
DIFVGHDWNLTLCDPTDMELCSQMEQFDEENDADNNDDDDDGVFLTQRDPIDMDIDDDDE
QEPLSTVPSVPVDQPKETSSPPMAPSLPQPSAGPLPCTMHQSDDPLKPDMPSMTQKKARP
STTKIYTPSSRNDTLVQDLKLPPPKPKIAHQALMPPPLVPPLKPRPPAPALPRPIQRPSA
PSVFRPAPILKAPPHPLRPVEPSHKPAPQPPPTYKTYPRPEASTSSSRQPSLSHNLRASI
LKANVLKWKYSFFEECKQFGPPEALCDMPLKLVPQTFRSFMDYFQTFFPLLVTNTFEELF
SEWLREDRVKLKLMVQSVDYGSLDTGLFTVTNANFFANLTPKQESQQLYPKEDDVVILWL
PQNTASYARSPFSDEHKPDDCQPHFGVVARSNVIIAGARRDLKLKVQTCGNVLSVDKQQV
QCEVIGSMLSAMRELNALCHIQDKALIQTILAPDKHFAHFLPATQVDQRFEGCNIEQAKA
IDCGVSMVMSGQPTPKICMIHGPPGTGKSDTIVNLLYQLSQRGAADPTGQKRLHALVCAP
SNAAVDNLMKKIIVFFKGQSKDGKRKGNCGDVNLVRLGSERTICEEVVAFSLDSQTRSRT
VKAQNIEQRIAELEQNMHNLTHMCAMAQDPAKLAQLRDKNLKLNEERERLSHQMKQCRSG
RQNTQRLILQEANIICCTLSTSGSMVLEMAFRRRGRVPFNCVIVDEAGQAKETETLIPLL
FRCPSLVLVGDPDQLPPTVISQKVKELGFDQSLMARLYKCIMSNRLSPPRIHFLSQQYRM
HPDICSFPSRYIYNNVLKTDRAIAQNRCSKDWACESYRVLDVADGQEMRENDSYFNPKEV
KLTVELVQLILEVYQNRVPSQSLRGIIGVITPYSGQKFRIRSALRQRNLQKVVVDTVDGF
QGREMDCIIVSCVRASNEMGSIGFLGNRNRMNVTITRAKYSLFILGHLRTLREHSDWRAL
IEDAESRGTIITTKEQHFKTDARKIFKRDALPPPPHRTQDWPSNRPRSNSTPPYPNTTRD
HRAPQSTKLTQDPRSSNASSGTIASRPASSTTARGPDPTGLPRDPRQRGTSLDTAPSRHP
SSTTARGPDPTGLPRDPRQRAIALDSTSTRPASSTTARGPQDPADRPRDPRQRGVSSNTA
PSRHPNLRVIRDRRDSSEHERRRPSQNQTVSSSSTVQRSNSISHQPPSNYSRRERH
NT seq
6831 nt
NT seq
+upstream
nt +downstream
nt
atggaaatatgcctgtggtgcactactgagcgagagaatgtggtggaatttctggagcag
tatgccgcctcctctctcagccaggaccaattacagactgccacagaagacttgaataat
tgtgctgactgtgtgtcagagtaccaccttgctcgctctcaggtgccacatctgcacaag
cgcctctgggtgctggaaacgaagcgcctgctaacgcgtttctgtcagatgacccaagat
gacattgaggatgacctctttattgtggaggataatcaggagaggcccgtgtcaaagatg
acgatgggggagtttgaagcagccctgcgaatacctcttatagagatactgcagtatcca
tacctgttggcgcattccaaattgagtgatgtgtgtcttgatgcactgtgtagaattgag
tccattgacataaaggagaaatataaaggcatctacctgttgttggtgcaccccaatgag
aaggtccgaagctgggcaatcgcaacagcgcggatgttgggatgtgtagaccgcgatgat
ttctatgatgtggaggaggttctggcctgcatgttctgtgtgcttgagctgggcatctct
tttcccctggaggactctgacccaccctcagcctgtaatggcaagcttgcccgcatgcca
gcgcacctctatgactctagcaatgtgaaaaactactggctaggtatatgcatgttgtta
acggtgctggatgcccaggcaatggactcgctgtttttaggacctaacaaacagaccaac
atcctgcagtgcatcctcaatgctatggaggaagaggggagagaatttgactccacgtct
gaccccttctggccagctctccagtgtttcatggtgattctggatcgcctaggtcctctc
agctggggttatatcgaccctatcaaagccttcaacataattactgacagctccagttat
atatcagagattgaaacaatcagatcaaacactcgtatgaatgtgaaggaagagattgaa
gatgatgaccttgtcacttgtagtcagatggtgtatgcaacattccttcagcaaaaatca
agtaagtcccacaggagtcatcgagcagaggggcttgaccagcaagtgtataaagagatg
gcgtcccttgtcagtttacttcatacagaactggggaaggagatgcacttgtacaacagc
accttcctctggtttattccctttgtgcggtccgtcatgaacatggctgaactcagcatc
cattacatacagccagtggtacaatacttgcgtgaccaagtcagaaaaatggtcaccaag
tccgccatatgggacaaagtcaccgtgtttttcgcctacctcctggtccatgttgtggaa
atgcttctaactgagggacgaatggatattttgcaacactgctcatacatgtggataaag
attattgtcaagggggccatgattgacaacatgatgggtacggggggatatgaagtgtcc
gtatcctcatcctcctccatgtggggctctggtcggtccactgggggagcgatgagtagt
ctgagcagcaccctccacctggcatgcttgaaagttattcgtctggttctaaaggaggga
ggccgcctgggctctgatttacaccctcgtgcattctatttcctgaacctgttgaacaaa
catctacgtgatgccactccaagagggtggagtttgtcagtatctgaacagaatgaacta
caacagtgccttaagcatctagcagaaaccttcgcaaagaaagtccccatgtctgcctca
acagcagcctctgtgtctgcattacccactcctccagcagagactgcagcaatggagtcc
ccttttcttggacaagtagatctgagtttcatcaaaaaggagcctgtgtcgtgtagttcc
cctgttagggacatggactgtacttctaatgtcgcatctgtcaaagacgagctagctgtg
gatattcatcatctgaagcctgacctcggaaaactgcaggctattcgttctcgtctcagc
gataatctgcccaagatgcaggccattgtgcagaacaaaccagatggggctgatcatgtc
agtccacctagtctggtctcagaagggaaaagatcaccagggagtcctcgtccttcaacc
tcaacctgcgctcagacgtcacacttaccagatgagaaagaagatgatgagccactgctt
gttatgcagcagcgcctaattcaaggggaaaatgacgagagtgaagaggaatcaaatgtg
agcattatagtaatttccgatgaagacatggcctctgtaaatggtgtagagagcggcgat
ggcatgggacccctgtttaagattaaaaaggaacaggagcatatggtagagagccctggt
cgtgattttgatggagatctcagtgaatcgcaagtttttgagtttgagactcaggaggat
gtcgcgtctgcttggagcgacacacgttttgatttagcaggttcatcaaaagaccctgtc
cgtgttgcctttgaaactgagtttgtcaaacctaaatctccaccccaaaaagtttcttca
aagaaaccgaaaccgaaaccaccaccacctatcattgagccacaacctttgaggaagaaa
cggacttcagctgctcaccaagtagcccaggcagcaaatgttgaagcgacagttgacgca
ccaagcacttcgcgtgtccacgcctctaccccagccattgttcctcctaagaaatttcga
aaggttccagaacccacgtctactgtggagcgcctggggttgaagaagcgtaaaaggact
gcatttgacctatctcagcggtccctgacctctgtggaagagctgcgccgctatggccag
acggtccaggtggaaaagaaagtaaagcgacttcgtatctccaagcctacctcaacccac
aagaccatggggaagaatcaaaagctgctggcctcccaggagatgcagtttcacagactg
agccgtaatcaggtacagaaagtaacttctcagactaagcaaaccactccgttgtctcca
actttgcaagcccagacagccagatcatgtacgagtgagggaaagaagcatgagggaaac
ggtagtaatgattcaaacatgcagagctgtgacttggatcagagatctaatggaagtggc
gatggtactcccactggtagcgctgttgaaagtgacgatggcaaagatgaggaacggcaa
gatatttttgtcggccatgactggaatctgactctatgtgatcccacagacatggagctc
tgctcccaaatggagcagtttgatgaagagaatgatgccgataataatgatgatgatgat
gatggggtcttcctcacacagagggatcctattgatatggacattgatgatgatgatgag
caggagcctttgtcaacagtgccttcagtacctgtggatcaacctaaagagacttcatct
ccccctatggctccctctttaccccaaccttcggcaggacctctaccatgcaccatgcac
caaagtgatgacccgttgaagcctgacatgccttcgatgacccagaagaaggctaggcct
tctaccacaaagatatacacgcctagttcacgcaatgatactctggttcaagatctgaaa
ctcccacctcccaaaccaaagattgcgcaccaagcacttatgcctccgcctcttgtacca
ccacttaaaccacggccacccgctccagctctaccacgacctatacaacgcccatctgct
ccatctgtattcagaccagctcccatactcaaagccccacctcaccccctgcgacctgtt
gagccaagccacaagcctgctccgcagccaccgcccacttacaagacatacccccgtcct
gaagcgtccacctcatcgagcagacaaccctcactctcgcacaacttaagggcatccatc
ctcaaggcaaacgttctgaagtggaagtacagttttttcgaggagtgtaagcagtttggc
cccccagaggctctctgtgatatgccactaaagctggtgccacagacctttcggtcattt
atggactatttccagacatttttccccctgctggttaccaacacatttgaagagctgttc
agtgagtggctaagggaggaccgggtcaaactgaagctgatggttcagtctgttgattac
gggtctttggatactggcctcttcactgtcaccaatgctaatttttttgcaaatctgaca
ccaaagcaggagtcgcaacagttgtacccaaaagaggacgacgttgtgatcctgtggctc
cctcagaacacagcttcatatgctcgctcacccttcagcgacgagcacaagccagatgat
tgccagccacactttggtgtcgttgcccgcagtaatgttatcattgcaggtgcgaggcga
gacctgaaactgaaggtacagacttgtggcaacgtgttgtccgttgacaagcagcaggta
cagtgtgaggtgataggcagtatgctgagtgccatgcgcgagctcaatgctctgtgccac
attcaagacaaggccctaatccagacgatcctggcaccagataagcactttgcacatttc
ctgccagccacccaggttgaccagaggtttgagggatgtaatatagaacaggcaaaggcg
atagattgtggcgtttccatggtgatgagcggacagccaacccccaaaatatgtatgatc
catggcccccctggaactggcaagagtgacacaattgtaaacctactctatcaactgtca
cagcgtggtgctgcagaccccacagggcagaagcgtttgcatgcacttgtctgtgctccc
tccaatgccgctgttgataatctgatgaagaagatcatcgtgttcttcaaaggacagagc
aaagatggaaaacgcaaaggcaactgtggagatgttaacctagtgagactgggcagtgaa
aggaccatttgtgaggaagttgtggcgttcagtttggacagtcaaaccaggagtcgaaca
gtaaaagcacagaatattgagcagaggattgcagaattggagcagaacatgcataacctg
acacacatgtgtgccatggcccaagaccctgcaaagcttgcccaattgcgcgacaaaaac
ttaaaactgaatgaggagagggagagactcagccaccaaatgaaacagtgcagaagtggg
aggcagaacacgcagcgcctcatcctgcaggaggccaacatcatctgctgcaccctcagc
accagcggaagcatggtgctggagatggccttccgtcgccgaggacgcgtaccgttcaac
tgtgtcatcgttgatgaggcaggtcaggccaaggagacggagactctgattcctctgctg
ttccgttgcccctcccttgtcttggtgggagatcctgaccagctcccaccaacagtcata
tcacagaaagtgaaggagctcgggtttgaccagtcactgatggctcgactgtacaaatgt
ataatgagtaatcgtctgagccccccacgcatccacttcctgagtcagcaatacaggatg
cacccagacatctgctccttcccttccagatacatctacaacaacgtactcaagaccgat
agagcgatcgctcagaatcgctgctctaaggactgggcttgcgagtcctacagggtgctg
gatgttgctgatggacaggagatgagggagaatgactcttatttcaaccctaaggaggtg
aaactgaccgtagagttggtgcagctgatcctcgaggtgtaccagaaccgcgtcccctcc
cagtcactccgtgggatcattggggtcatcacgccatacagtggacagaagtttcggatt
cgcagtgccctgcgacaaagaaacttgcaaaaggtggtggtggacacagtcgatggcttt
cagggcagggagatggactgtatcattgtgtcctgtgtgcgagccagcaatgaaatgggc
tccatcggttttctagggaatcgtaaccgaatgaatgtcacgatcaccagagccaaatac
agcctcttcattttgggacacctgcggaccctgagggaacacagcgactggagggctttg
atagaggatgcggagagccgtgggaccatcataacgacgaaggagcagcatttcaaaacc
gatgcccgcaagatatttaaacgagatgccctcccccctccccctcacaggacacaagac
tggccctcgaacaggccccgatcaaacagcacccccccgtacccaaacaccactagggat
cacagggctccacaatccaccaagctcacccaagacccacggtccagtaatgcgtcctca
ggaacgattgcctccaggcctgcatcctccaccacagccaggggaccggatcctacaggt
ctgccaagagaccctcggcaacggggcacctccttggacactgccccctccaggcatcca
tcctccaccacagccaggggaccggatcccacaggtctgccaagagaccctcggcagcgg
gccattgccttggactctacctccaccaggcctgcatcttccaccacagccaggggaccg
caggatcccgcagatcggccgagagaccctcggcagcggggcgtctcatcgaacactgcc
ccctccaggcatccgaatctcagggttatcagggaccggcgtgactccagtgaacatgag
cgacgacgacccagtcagaaccagacggtatcgtcgagttccacggtccaaagaagcaac
tccatctctcatcaacccccttcaaattactcgaggagggagaggcactag
DBGET
integrated database retrieval system
