Sardina pilchardus (sardine): 134100471
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Entry
134100471 CDS
T10667
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134100471 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spil00536
]
134100471 (col5a1)
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134100471 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
134100471
NCBI-ProteinID:
XP_062409664
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All DBs
Position
14:24199575..24287671
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AA seq
1998 aa
AA seq
DB search
MDTHIRWKVKRRLRDVQLTLAIIIFFVTSEARSAEPADLLKILDFHSLPEGVTKTTGFCS
HRKSAKGPDVAYRVTKDAQLSTPTKQLYPASAFPEDFSILATVRPKKGSQAFLLSLYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRVAISVHGQTITLILDC
KKKLVRTLSRSAHPIIDTKGIVVFGTRILDEEVFEGDIQQLLVVSDPRAAMDYCEHYSPD
CEVAAPEQPQAQDPNTDEYNTEEDSYYYEYPYYEDQDVKAEDGTDAPDEELTVGGGDRIV
TSVTSVGGGASSSSSSSSSSAGGGSSRVAAESHTDTGAGGSDTYEGYDSYDSYYDEASPS
PDTSSSSSSSSSNHRVTITDAGSESELDLGLGGKVEMGIGAEVDKIITTGGGGTGSSSTI
TRIINSTAVAGGDGYDDGYGEGYDSYSYGEGSDYSVGTGGGVGGGSSSSSSSSSHGGGGS
SSSSHTITIGGGAAGGGGAGGAGAAGGAGGAAGNGSWSTVTIGGGSVSAGGGSVSVGGGG
GGGGGGATGTGQGGLGAEMDYEDLDIKDYDDKEIKDIYESYPDYYTDKDGDTSLPAQTEY
GQGQVDGARGEKGQKGEPAVIEPGMLVEGPPGPEGPTGLPGPPGSSGSPGSPGDPGERGP
NGRAGLPGADGLPGPPGTVLMLPFRMSSGGDGGSKGPAMSAQEAQMQSMMQQARLAMRGS
TGPMGLTGRPGPLGPHGPPGLKGESGEGGPQGPRGPMGTSGPTGKPGRRGRAGADGARGM
PGQTGTKGDRGFDGLAGLPGEKGHRGESGPQGPPGPSGEDGERGDDGEIGPRGLPGESGP
RGLLGPKGPSGPPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGGPGAQGLPGPQGAIGV
PGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGEKGHLGPSGPQGPIGYPGPRGVKGADGV
RGLKGGKGEKGEDGFPGFKGDMGIKGDRGELGPHGPRGEDGPEGPKGRSGLPGDSGPLGV
NGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGDKGTRGTAGKPGPRGQRGPTGPRGE
RGPRGPTGKAGPKGNSGSDGPPGPPGERGLPGPQGPTGFPGPKGPPGPAGKDGLPGHPGQ
RGETGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGPPGPPGEQGLPGSAGKEGAKGD
PGPAGPTGKDGPPGMRGFPGERGLPGATGADGLKGSEGPNGPPGPAGSPGERGPSGPAGP
TGLPGRPGPQGPPGPNGEKGGPGEKGPQGPAGRDGIQGPVGLPGPAGPLGPPGEDGDKGE
LGEPGQKGSKGEKGEHGPPGPTGPQGPVGQPGPSGADGEPGPRGQQGLFGQKGDEGSRGF
PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPAGPTGADGPQGPPGGIGNPGA
VGEKGDSGEAGEPGLQGDVGPPGPRGERGEKGEGGPAGAAGPPGPKGPPGDDGPKGSPGP
SGFPGDPGPPGEPGPAGLDGLPGDKGDDGEAGQPGSPGPTGEAGPSGPPGKRGPPGPAGP
EGRQGEKGAKGESGLDGPPGKTGPVGPQGAPGKPGSEGLRGIPGPVGEQGLPGSPGPDGP
PGPMGPPGLPGLKGDSGLKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGQGGSKGDNGI
AGQTGPLGPIGPPGLPGPPGPKGAKGSSGQTGPKGESGVPGPPGPPGPPGDVIHPLPIMH
SPKRAKRNIDASQLMDDDANYKDYDDGMEEIFGSLNSLKLEIEQMKHPLGTQTNPARTCK
DLQLCHPEFPDGEYWIDPNQGCSRDAFKVYCNFTAGGESCIFPDKKSEGTRLTSWVKESP
GSWFSEFKRGKLLSYVDAEGNPIGVVQMTFMRLLSATARQNLTYNCYQSVAWHDPDSDSY
DKAVRFLGSNDEEMSYDNNPYIRAVVDGCALKKGYEKTILEISTPKVEQVPFVDIMFNDF
GGATQKFGFEVGPACFIG
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggatacccacataagatggaaagttaaaaggaggttaagggacgtgcaactcactcta
gcgataattatattttttgtcacttcagaagcccgttcagcagaacctgcggatctcttg
aagattttagattttcacagtttgcctgagggtgtaacgaaaaccacgggattctgctcg
cataggaagtctgcgaaaggccccgacgtggcctacagagtaaccaaagatgcccagctc
agcacccctaccaaacagctctaccctgcttctgcgtttccggaggacttctccatcctg
gccacggtgaggccgaagaagggcagccaggccttcctgctgtcgctctacaacgagcag
ggcatccagcagctgggtctggaggtgggccgctcgcccgtcttcctgtacgaggaccac
acaggcaagcccggccccgaggactacccgctcttcaggggcatcaacctgtccgacgga
aagtggcaccgtgttgcaatcagcgtgcacgggcagaccattaccctcatcctggactgt
aagaagaagttggtacgcaccctgtcacgctcggcgcaccccatcatcgacaccaagggt
attgtggtctttggcacacgtatcctggatgaggaggtctttgagggtgacatccagcag
ctgctggttgtgtctgacccccgcgcagccatggactactgtgagcactacagccctgac
tgtgaggtggccgccccggaacagccccaggcccaggaccccaacaccgacgaatacaac
acggaggaggacagctactactatgagtacccctactatgaggaccaggacgtgaaggca
gaggacggcaccgacgcacctgatgaggagctgactgtgggaggtggagaccgcatcgtc
acctccgtcacctctgtgggtggaggcgcaagctcgtccagcagcagcagcagcagcagc
gcgggcggaggcagcagccgagtggccgcggagtcccacaccgacacgggcgccggcggc
tcggacacctacgagggctacgactcctacgactcctactacgacgaggccagcccctca
ccggacaccagcagcagcagcagcagcagcagctccaaccaccgggtcaccatcactgac
gccggctcggaatcggagctggacctgggcttgggcggcaaggtggaaatgggaattgga
gccgaggtggataaaatcatcaccaccggaggtggaggaaccggcagctcgagcaccatc
accaggatcatcaacagcaccgccgtggctggtggagacggctacgacgacggctacggc
gagggctacgactcgtactcgtacggcgagggctccgactacagcgtgggcaccggcggc
ggggtcggtggcggcagcagcagcagcagcagcagcagcagccatggtggcggcggctcc
agcagcagtagccacaccatcaccatcggaggcggcgccgccggaggtggaggagcagga
ggagcaggagcagcaggaggagcaggaggagcagcgggcaacggcagctggagcacggtc
accatcggaggcggctcggtgtcggcgggaggcggctcggtgtcggtcggaggcggcggt
ggtggcggtggaggtggcgccacaggaacaggacagggtggtctgggcgcggagatggat
tacgaggatctggacattaaggattacgacgacaaggagattaaagacatctacgagagc
taccccgactactacacagacaaggacggggatacatcactgcctgcacagaccgagtat
ggacaaggacaggtggatggagccaggggagagaagggacaaaaaggagagcctgctgtc
attgagcctggaatgctggtggagggaccacctggtcctgaaggcccaactggtctgcct
ggtcccccaggttccagtggctctccgggcagtcccggagatcccggcgagaggggtcca
aatggtcgtgctggtcttcctggtgctgatggtcttccagggccccctgggacagtcttg
atgctgcctttccgcatgagctctggtggagatggaggcagcaagggcccagctatgtct
gctcaggaggcccagatgcagtccatgatgcaacaagccagacttgccatgcgtggctct
actggccctatgggtctcacaggtcggccaggaccactgggtcctcatggtcctcccgga
ctgaagggagagtctggtgaaggtggtccacagggtccccgtggccctatgggcacctcc
gggcccacaggaaagccgggccgcaggggtcgtgctggtgctgatggagccagaggaatg
cccggccagaccggtaccaagggtgacaggggtttcgatggcctggctggacttcccgga
gagaagggacacagaggtgaatctggacctcagggaccacctgggccatcaggagaggat
ggagagagaggagatgatggagagatcggacctaggggacttccaggtgaatctggacct
cgtggtttgttgggacctaaaggaccttcagggccccctggacctcctggtgtgactgga
atggacggccaccccggacccaaaggaaacattggacctcagggagagccaggacctcca
ggacagcaaggcggccctggtgctcagggactaccagggcctcagggagcaattggagta
cccggagagaagggtccaactggaaaaccaggtctaccaggaatgccaggagctgatggc
ccaccaggtcacccaggcaaagagggcccatctggagagaagggacatctgggacccagt
ggtcctcagggccccatcggatatcctggacccagaggagtgaagggagctgatggagtc
cgtggcctgaaaggaggcaagggtgaaaagggcgaggatggattcccaggctttaaggga
gacatgggtataaagggcgacaggggagagctcggacctcatggacccagaggagaggac
ggtcctgagggacccaaaggaaggtcaggtctccctggagactctggtcctcttggagta
aatggagaaaagggtaaattgggtgtgcccgggttgccaggttacccaggaagacaagga
ccaaagggttctcagggattccaaggattcccaggcgctaacggagataagggtaccagg
ggaacagcaggcaagccaggccccagaggtcagaggggaccaacgggaccacgtggagag
aggggacccagaggtccaacaggaaaagccggaccaaagggtaactcaggaagcgacggc
cccccaggacctcccggtgaacggggtctgccagggcctcagggtccaactggattcccc
ggaccaaagggaccccctggaccagctgggaaagatggactgcccggacatccaggacag
agaggagagactggtttccaaggcaagactggacctccaggacccccaggtgtggttgga
cctcagggccccacaggtgagactggaccaatgggagaccgtgggcaccctggaccccca
ggcccaccaggtgagcagggtctgccaggatccgccggaaaggaaggagccaagggagac
ccaggtcccgctggccccactggtaaagatggcccacctggcatgagaggcttccccgga
gaacgtggtcttccaggtgcaacgggagccgatggtctgaaaggaagcgagggacccaat
ggtccacctggtcctgctggctcccctggtgagcgcggtccttctggcccagctggaccc
actggtctgccaggtcgccctggaccacagggacctcccggccccaacggcgagaaggga
ggaccaggcgagaaaggaccccagggccctgctggtcgcgatggcatccagggaccagta
ggtctgcctgggcctgctggacctctcggaccccctggagaggatggagataagggagag
ctcggtgagcccggtcagaagggaagcaaaggagagaaaggagaacatggtccccctggt
cctactggaccacaaggtcctgttggtcagcccggtccatctggagcggacggcgagcct
ggacccagaggtcagcagggtctgttcggacagaagggagacgaaggctccagaggattc
cccggacctccaggtcccgtcggtctacagggtctgccaggacctccaggcgagaaggga
gagactggtgacgtgggtcagatgggtccccctggtcctcctggacccagaggccctgcc
ggacccacaggagcagatggaccccagggacctccaggtggcatcggtaacccaggagct
gttggagagaagggtgattccggtgaagcaggagagcccggactgcagggagacgtcggc
cctccgggtccaagaggcgagcgtggagagaagggagaaggtggtcccgctggtgctgct
ggacctcccggtcctaaaggcccccccggagacgacggtcctaaaggcagccccggtcca
agcggtttccctggtgatcctggtcctcctggagagcctggtcccgccggattggatgga
ttacctggtgacaagggtgatgacggagaggctggtcagccgggttctcctgggcccact
ggtgaggcagggccttctggacctccaggaaagaggggtccacctggacctgctgggcct
gagggaagacagggagagaaaggagccaagggagagtctggtctggacggtcctcctgga
aagactggccccgttggacctcaaggtgctcccggcaaacccggttctgaaggtctgaga
ggcatccctggcccagtgggagaacaaggtctgcccggttcccctggccctgatgggccg
ccaggacccatgggtcctcccggcctgccaggactgaagggagacagcggtctgaaaggt
gaaaagggtcacccaggtcttattggattgatcggaccaccaggcgagcagggagagaag
ggagaccgaggccttcccggaccccagggtcaaggcggatctaaaggagacaatggtatt
gctggccaaaccggtcctctgggccccatcggacccccaggattgcctggtcctcccggt
cccaagggagccaagggctcttctggtcaaacaggtcctaagggagaatctggtgttcct
gggccccctggtcctcctggtcctcccggcgatgtcatccatcctctgcctataatgcac
agccccaagcgtgccaagaggaacatcgacgccagccagctgatggacgacgacgccaac
tataaggattacgacgatggcatggaggagatctttggctcgctcaactccctgaagctg
gagatcgagcagatgaagcacccgctgggcacccagacaaaccccgcccgtacctgcaag
gacctgcagctctgccacccagaattccccgatggtgaatactggatcgatcccaatcag
ggctgctcgcgtgacgccttcaaggtctactgcaacttcaccgcaggaggcgagagctgc
atcttccccgacaagaagagcgaagggacgagactcacctcctgggtgaaggaatctcca
ggctcctggttcagtgaattcaaacgtggtaaactgctctcgtacgtggatgcggagggt
aaccccatcggcgtggtgcagatgacctttatgcggttgctcagcgccacagcccgccag
aacctcacatacaactgctaccagtcggtggcgtggcacgacccggactcggactcgtac
gacaaggccgtccgcttcctgggctccaacgatgaggagatgtcttacgacaacaacccc
tacatccgagctgttgtggacgggtgtgcgttgaaaaagggctatgaaaagactattctt
gagatcagcacaccgaaggtggaacaggtacctttcgtagacatcatgttcaacgacttc
ggcggagcgacacagaagtttggcttcgaagtgggacctgcctgcttcatcggctaa
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