Sardina pilchardus (sardine): 134100502
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Entry
134100502 CDS
T10667
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spil03009
]
134100502 (ddx55)
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134100502 (ddx55)
Ribosome biogenesis [BR:
spil03009
]
Eukaryotic type
Pre-60S particles
Helicases
134100502 (ddx55)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Cas3-like_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
134100502
NCBI-ProteinID:
XP_062409705
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Position
14:complement(11449357..11454995)
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AA seq
584 aa
AA seq
DB search
MENSTAGKWDSLPVKLDDNITQTLDELKFTHMTPVQAACIPLFMSNKDVAAEAVTGSGKT
LAFVIPILEILRKREEQLKKLQIGALIITPTRELALQISEVMGRFLQRYPQFRQILLVGG
SNPIDDVERFKSQGANIIVATPGRLEDMFRRKADGLDLASCVKTLDVLVLDEADRLLGMG
FEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRIAVKEKGVAASNSQKTPA
RLSNYYTMCRAEEKFNTLVAFLRQHKNEKQLVFFSTCACVEYFGKALEVLIKKVTILCIH
GKMDKKDKRSKIFSEFRELKSGILVCTDVMARGIDIPDVHWVLQYDPPSNASSFVHRCGR
TARIGNHGNALVFLLPMEETYVNFLSINQKCPLQKLPRIKDVVDVLPKIKALALSDRAIF
EKGMRAFVSYFQAYAKHECSLIFRIKDLDFATLAKGFALLRMPKMPELWGKSFPDFQEEA
VDTDTIRFKDKQREKQRQKKLAELKEKPAMPKKSFIKNKSWSKQNNKKERRKKNAAKRKR
AEGSDIEDEDMAELRSDTRLLKKLKKGKISTEDFDNQMSGRRDS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactcaacagctggaaaatgggacagtttaccagtaaaactggacgacaacatt
acacagactctcgacgaattgaaatttacccacatgactccagtccaggccgcttgcata
cctctcttcatgagtaacaaagatgtggctgccgaagcggtgactggcagcggaaagact
cttgcctttgtgattccgattcttgagattctccgcaaacgtgaagagcagcttaagaag
ctacagattggtgcactaatcatcacacccactcgagaactggccctacaaattagtgag
gttatgggacgtttcttgcaaagatatccccagttcagacaaattcttttggttggtggc
agcaatcctattgatgatgtggagaggtttaagagccagggggcaaatattattgtggca
acaccgggtcgcctggaagacatgttccgtcggaaagctgatggactggatctggccagc
tgtgtgaagactttggatgttcttgttctggatgaagccgaccgtttgcttggcatggga
tttgaagctagccttaacaccatcctgggctacttgcccaagcaacggaggacagggctg
ttctccgccactcagacacaggaactggaaaagttggtgagggcggggcttcgcaaccct
gtgcgaatcgcagtcaaggagaagggtgtagctgccagcaactctcagaaaaccccagcg
agactcagcaactactacactatgtgtagagctgaggagaagttcaacacactggtggcc
ttcctgaggcagcacaagaatgagaagcagctggtgttcttcagcacctgtgcctgtgtg
gagtactttgggaaagccctggaggttctcatcaagaaggtcaccatcctctgcatccac
ggcaagatggacaagaaagacaaacgcagcaaaatcttctctgaattccgagagctcaag
agtgggattctggtgtgcacagatgtgatggcacgaggcatcgacatcccagatgttcac
tgggtgttgcagtatgaccctcccagcaatgccagctcttttgtccatcgctgtggccga
actgctcgcattggtaaccatggcaatgcccttgttttcttgctgcccatggaggagacg
tatgtcaacttcctgtccatcaaccagaagtgccctctgcaaaaattacctcgtataaag
gatgtggtggacgtcttgccaaagataaaggccctggcactttcagaccgtgctatcttt
gagaagggcatgcgagcgtttgtatcctacttccaggcctacgccaaacatgagtgcagc
ctcatcttcaggatcaaagatctcgactttgctactttggccaagggctttgcgcttctc
cgcatgcctaagatgccggaactgtggggcaagagttttcccgacttccaggaggaggcg
gtggatacagacaccattcgcttcaaggacaaacaacgggagaaacagagacagaagaag
cttgccgaactgaaagagaaaccagcgatgcccaagaaaagcttcatcaagaacaaatcc
tggtccaaacagaacaacaaaaaagaaagaaggaaaaagaatgctgccaagagaaagcgg
gcagagggatctgacattgaagatgaagacatggctgaactccggagcgatacccgtctc
ctcaagaaactgaagaagggtaaaatcagtactgaggactttgataaccagatgtctggt
cggcgtgactcgtag
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