Sardina pilchardus (sardine): 134100534
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Entry
134100534 CDS
T10667
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spil03021
]
134100534 (chd1)
03036 Chromosome and associated proteins [BR:
spil03036
]
134100534 (chd1)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
134100534 (chd1)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
134100534 (chd1)
SLIK complex
134100534 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CHD1-like_C
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
134100534
NCBI-ProteinID:
XP_062409753
LinkDB
All DBs
Position
14:16952395..16977944
Genome browser
AA seq
1834 aa
AA seq
DB search
MEGRSEDESVSNSSGESSNSDDESGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQ
SDSDSEKSKKTEPAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQQQQQQQQQSSS
NSSDEDSSSSDDSDDDSSREKSKGSGSGSDSDSGSGSDSGSNSGSDSSREQQEENSDASA
SDYEPSHKVKSRKPPTKANARNGKKSKAQKKKPPGGSSSDEDDYDKKALAGPRRQATVNV
SYKEDDELKTDSDDLVEVTGEDVPQPEEDEFETLERVMDTRVARKGATGATTTVYAVEAD
GDPNGTFNPHKEAGDVQYLIKWKGWSHIHNTWETEDTLKLQNVKGMKKLDNFKKKKSEER
KWLKAASPEDVEYFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSE
CSWEDGALIGRKFQKCIDDYMCRNHSKTIPYRDCKVLKQRPRFLPMKKQPLYITEGLELR
DYQLDGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYMFHEHQLYGPFLLVVPLSTL
TSWQREIQLWAPQMNVVVYLGDITSRNMIRTHEWMHVQNKRLKLNILLTTYEILLKDKSF
LGNVSWAFIGVDEAHRLKNDDSLLYKTMMDFRSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFHSWELFEDEHGMGRDSGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQ
KQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFYSRQEALQH
LIRSSGKLVLLDKLLVRLKEQGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEM
RRQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKRQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSTSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQDMDIEEILKRAETRENDPGQSSIGEELLSQFKVA
NFSMMDEEEMDMDPERGHRNWDDIIPEEQRRRLEEEERQKELEEIYLLPRMRNCAKQISF
NGNEGRRSRNRRYSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFG
GPLERLDAIARDAELVDKSEHDLRRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGPT
FRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYKLPCHSKAAHFDIEWGKEDDASL
LIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKE
AQRQAGTANSRKRKPRGKKNKNVKPAKVDEAVNSMSSAPPSDKSSEEEEDKEEEREVAPV
KPPTRRGRAEPVVVKQEEEEEEEEDSEPEPLTPKEPEEKEKEKEREVKKEVKKEKKEDGR
DGKEKRETKEKKEAKPPEPVTRVEEPPVEKMVEVKAEVREKGGKKADTPVHIASGGENVP
ISEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITEC
LKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAADQNTSTVNTQ
SFKHSDIERLKDNSHQDDSSRDSYSSDRHHSSSTRYHSGSEQSKEPRHGNESYRKGSDTR
KRPYSSFSNGKDLRDRDRDRDRDRDRDRDQYRSDRQDSRYYSDSKHRKLDDHRSSRDHRA
ESSSKDRHSDHRHSDHRSDRHSGSDYSSHHKSSRDYRYHSDWQSDHRASGSGPRSPRDQR
SPYESRSPMGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggagggacgcagcgaagacgaaagtgtgagcaacagcagtggagagtcaagtaactct
gatgatgagtccggatccggatcgggctctggctccggctccagctccagcagcagtagc
tccagcagcagccaatcagggagcagcgactcaggaagtggctctgactccggcagccag
tccgattcagactcggagaagtccaagaaaactgaaccggcaaagattgatggggcagag
ttttggaagtcaaaccccagtatcctggcagtgcaaaggtcagccatgctcaggaaacag
cagcttcagcagcaacagcaacagcagcagcaacagcagcagcagcagcagagctcttcg
aacagctcggatgaggactcttccagcagcgatgactcggatgatgattcgtcgagagaa
aaaagcaaagggtctggttcaggctcggattcagattccgggtcagggtccgattctggc
agcaactctggttctgattcctctcgcgagcagcaggaagaaaacagcgacgcctccgca
tcagactacgaacctagtcacaaagtcaagagccgaaagccacccaccaaggccaatgcc
aggaatggcaaaaagagtaaagcgcagaagaagaagccgccagggggctcctcctcggac
gaggacgactatgacaagaaggcgctggccggcccgcggcggcaggccacggtcaacgtg
agctacaaggaggacgacgagctcaagaccgactcggacgacctggtggaggtgaccggc
gaggacgtgccgcagccggaggaggacgagtttgagacgctggagcgagtgatggacacg
agagttgccaggaaaggagccacgggagccaccactacagtgtatgccgttgaggcagac
ggagaccccaacgggaccttcaacccccacaaggaggcgggagacgtccagtacctgatc
aagtggaagggctggtcccacattcacaacacctgggagaccgaggacactctcaagctg
cagaacgtcaagggcatgaagaagctggacaacttcaagaagaagaagtcagaggagagg
aagtggctaaaagcagcatcaccagaggatgttgagtacttcaactgtcagcaagagctt
atggatgacttgcactcccagtaccagcttgtggagagaattattggccactcaaaccag
aagtcggcagcaggttatcctgactacctgtgtaagtggcaggggcttccttactccgag
tgcagctgggaagatggtgccctcatcggcagaaagttccagaagtgcattgatgattac
atgtgccgcaaccacagcaagaccattccttacagagactgcaaggttttgaagcagagg
ccaaggtttttgcccatgaaaaagcagcccctctatatcacagagggcctagagctgcga
gactaccagctggacggcttaaactggatggctcattcctggtgcaaagggaacagctgt
atcctggcagacgagatggggctggggaagaccatccagaccatctccttcctcaactac
atgttccacgagcaccagctgtacgggcccttcctgctggtggtgcccctgtccaccctc
acctcctggcagcgcgagatccagctctgggccccgcagatgaacgtggtcgtctacctg
ggcgacatcaccagcaggaacatgatccgaacgcatgagtggatgcacgttcagaacaag
cgtctgaagctcaacatattgctcaccacttatgagattctcttgaaagataagtcattc
ctgggcaacgtgagttgggccttcatcggcgtggacgaggcccaccggctgaagaacgac
gactcgctcctctacaagacgatgatggacttccgctccaaccacaggctcctcatcaca
gggacgccgctgcagaactccctcaaggagctctggtcgctactgcacttcatcatgcca
gaaaagtttcactcatgggagctgttcgaggacgagcacgggatgggccgcgactccggc
tacgccagcctccacaaggagctggagcccttcctgctgcggcgcgtcaagaaggacgtg
gagaagtcgctgcccgccaaggtggagcagatcctccgggtggagatgagcgccattcag
aagcagtactacaagtggattttaaccagaaactacaaagctcttagcaaaggcacaaag
ggcagcacgtcaggctttctcaacatcatgatggagcttaagaagtgctgtaaccactgc
tacctcatcaagccgccagaggacaacgagttctacagcagacaagaggcgctgcagcac
ttgatccgtagcagtgggaagctggtgttgctggacaagctgctggttcggctgaaggag
caaggtcaccgcgtgctcatcttctctcagatggtcaggatgctggacattctggccgag
tacctgaagagccggcagttcctcttccagcggttagatggctccatcaaaggcgagatg
agaaggcaggcactggatcatttcaacgcagagggctctgaggatttctgtttcttgctg
tccacgcgagctggaggtctgggtatcaacctggcatctgcagacacagtggtgatcttc
gactcggactggaacccccagaatgacttgcaggctcaggccagagctcacaggatcggt
caaaagagacaggtgaacatctaccggctggtgaccaaagggtcagtggaggaagagatc
atcgagcgggccaaaaagaagatggtgttggaccacctggtcatccagagaatggacacc
actggcaagactgttctacatacgggcgccgctccctccacttccaccccgttcaacaag
gaggagctgtcggccatcctcaagtttggcgccgaggagctcttcaaggagcccgagggg
gaggagcaggagccacaggatatggatattgaggagatcctgaagagagcagagaccagg
gagaatgaccctggccagtccagtataggagaagagctcctgtctcagttcaaggtggcg
aacttctccatgatggatgaagaggagatggacatggacccggagcggggtcacaggaac
tgggacgacatcatccccgaggagcagcggcggcgccttgaggaggaggagcgccagaag
gagctggaggagatctacctgctgccgcgcatgaggaattgtgccaagcagataagcttt
aacgggaacgagggccggcgcagccggaatcggaggtactcgggctcagacagcgactcc
gtgtcggaccgcaagaggcccaagaaacgcggcaggcctcggaccatcccacgagagaac
atcaaaggcttcacagacgctgaaattcgaagattcatcaagagctacaaaaaatttggc
ggccctctggaaaggttagacgcgattgcgcgagacgcagagctggtggacaagtcggag
cacgacctgaggcgactggcggagacggtgcacaacggctgcgtgaggacgctgagggag
aacccctgtggtccagagaagacctcaggaggcaggcgggggaaagtgaaggggcccacg
ttccgaatctccggggtccaggtgaacgccaagctggtcatctcccacgaagaggagctg
gctcccctccacaaggccatccccgcagacccggaggagaggaaaaggtataaattacct
tgccattcaaaggcagctcactttgacattgaatggggcaaagaagatgatgccagtttg
ctcattggtatctatgagtatggctatgggagctgggagatgatcaaaatggacccagac
ctcaacctgactcataagttgttgcctgacgaccccgacaagaagccccaggccaaacag
ctccagacgagagcggactacctcatcaaattactgagcaaagacctggccaagaaggag
gcgcagcggcaagcgggcacggccaactctcggaagaggaaacccaggggcaagaagaac
aaaaatgtgaagccagcaaaggtggacgaggcggtgaacagcatgtcctcagcgcctccc
tcggacaagagctcagaggaggaggaggacaaggaggaagaaagggaagtggccccggtg
aaacctcccaccagaaggggacgggcggaacctgtggtcgtcaagcaggaggaagaggag
gaggaggaagaggactctgagcctgagcccctcacccccaaagagcccgaggagaaagag
aaagagaaggagagggaggtgaagaaagaggtgaagaaggagaagaaagaggatggtcgc
gacggcaaagagaagagggaaaccaaggagaagaaggaggccaagcccccagagcctgtg
actcgggtagaggagccaccggtggagaagatggtggaggtgaaagccgaggttcgggag
aagggagggaagaaggcggacacgccggtccacatcgcttcagggggagagaatgttccc
atctcagaggagtcagaggagctggaccagaagaccttcagtgtgtgtaaggagcgcatg
cggccggtgaaggcagccttgaagcagctggaccggccggagaagggcctgtccgagcgt
gagcaactggaacacacccgccagtgcctcatcaagatcggagaccacatcaccgagtgt
ctgaaggagtacaccaacccagagcagatcaagcagtggaggaaaaacctctggatattt
gtgtcaaagttcactgaatttgatgcaagaaaattgcataaattatataagcatgccata
aagaaaagacaggagaatgctcaggcagcggaccagaacactagcactgtaaatactcaa
agctttaaacactcagacattgaaaggttaaaggacaactcgcaccaggacgacagcagc
agggacagctacagctcagaccgccaccactcgtcgtcgacgcgctaccacagcggcagc
gagcagagcaaggagccgcggcacggcaacgagtcgtacaggaagggcagcgacacccgc
aagaggccctactcctccttcagcaacggcaaagacctccgggacagggaccgggaccga
gatagagacagagatcgagatcgagaccagtacagatcagatcgacaggacagcagatac
tacagcgacagcaagcacaggaagttagacgaccaccgctcgagtcgagaccatcgggca
gagagcagctccaaggaccggcactccgaccaccgacattcagaccaccggtccgaccgc
cactcgggctcggactacagcagccaccacaagtcgtcccgcgactaccgctaccactcg
gactggcagtcggaccacagggcatcgggcagcgggccccggtcgccccgcgaccagcgc
tccccgtatgagtcgcgctcgcccatgggtcaccgctcgccgttcgagtattcgtccgac
cacaagagcacgcccgagcagatctggagcagccgcaagacataa
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integrated database retrieval system
