Sardina pilchardus (sardine): 134100624
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Entry
134100624 CDS
T10667
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A
KO
K08524
retinoid X receptor alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03320
PPAR signaling pathway
spil04148
Efferocytosis
spil04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134100624 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
134100624 (rxraa)
03320 PPAR signaling pathway
134100624 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spil03000
]
134100624 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
spil03310
]
134100624 (rxraa)
Transcription factors [BR:
spil03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
134100624 (rxraa)
Nuclear receptors [BR:
spil03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
134100624 (rxraa)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
134100624
NCBI-ProteinID:
XP_062409915
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Position
14:22693969..22835025
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AA seq
507 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSDGCTCFSGMCHLHQRRLSSAPSVFSSMEGITYK
SSGHMTSSPLNSPSSHRGMHPALLSPSSMGPGPLHSPISSLPSPMNGLGSHFSVISSPMG
PHTMSSPSMGYSSSISPQLNSPMNSVSSSEDIKPPVGLNGVMKVPAQPCNNPLSLTKHIC
AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTIDKRQRNRCQYCRYQKC
LAMGMKREAVQEERQRAKDCKENEVESTSSVNEDMPVEKILEAELAVEPKTETYIETNLG
MPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH
RSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL
FNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEH
LFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcgttggcgccc
cccccacagagaggccgctccgatggctgcacctgcttcagtggcatgtgccacctccac
cagcgacgcctgtcctccgcgccgtccgtcttctcttcgatggagggcatcacatacaaa
tcgtcgggtcacatgacgtcgtcgccgctgaactcgccctcgtcccatcggggcatgcac
ccggcgctgctcagcccgtcctccatgggcccgggccccctgcactcccccatcagcagc
ctgccgtcgcccatgaacggcctgggctcgcacttctccgtcatcagctcgcccatgggc
ccccacaccatgagctcgcccagcatgggctacagctccagcatcagcccgcagctgaac
tccccgatgaactcagtgagcagttccgaggacatcaagcctccggtaggcctgaacggc
gtgatgaaggtgcccgcgcagccttgcaacaaccccctgtccctcaccaaacacatatgt
gccatctgtggagaccgctcttcaggcaaacactacggggtgtacagctgcgaggggtgt
aaaggcttcttcaagcggaccgttcgcaaggacctgacgtacacctgccgcgacaacaag
gactgcaccatcgacaagcgccaacgcaaccgctgccagtactgccgctaccagaagtgc
ctggccatgggcatgaagagagaagccgtccaggaggagcgtcagcgggccaaggactgc
aaggagaacgaggtggagtccaccagcagcgtcaacgaggacatgcccgtggagaagatc
ctggaggccgagctggccgtcgagcccaagaccgagacctacatcgagacaaacctcggc
atgccctccaactcgcccaacgaccccgtcacaaacatctgccaggcggcagacaagcag
ctgttcaccctggtggagtgggccaaaaggatcccccacttctccgagctgccgctcgac
gaccaggtcatcctgctgagagcaggctggaacgagctccttatcgcctccttctcgcac
cgctccatcgcggtgaaggacggcatcctgctggccacgggtctccacgtgcaccgcaac
agcgcccacagcgccggggtgggcgccatctttgacagggtgctgacagagctggtctcc
aagatgcgggacatgcagatggacaagactgagcttggatgcctacgggccatcgtcctc
ttcaacccagactccaaaggactgtcgaaccctagtgaggtggaggctctccgggagaag
gtctacgcctccctggaggcttactgcaagcagaagtaccctgagcagcctggacggttc
gctaagttgctcctgcgtctgccggccctgcgctctattggcctcaagtgtctggagcac
ctgttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctg
gaggcgccacaccaaatgacataa
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